v1.0.5

v1.0.5 (2025-11-04)

Bug Fixes

• Fix container missing paths (c5ba2c9)

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Detailed Changes: v1.0.4...v1.0.5

v1.0.4

v1.0.4 (2025-11-04)

Bug Fixes

• Add compatibility with sparse alignment files (14e988b)

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Detailed Changes: v1.0.3...v1.0.4

v1.0.3

v1.0.3 (2024-09-05)

Fix

• fix: Fix docker compatibility (d18e586)

v1.0.2

v1.0.2 (2024-07-17)

Fix

• fix: Add default VAF and improve docs (cf6a1b4)

v1.0.1

v1.0.1 (2023-11-28)

Fix

• fix: Fix Dockerfile (7ee328b)

v1.0.0

v1.0.0 (2023-11-28)

Breaking

• fix: Fix old URL

BREAKING CHANGE: Dummy commit for release (e6a87b3)

Feature

• feat: Add parameters to utils scripts (73ac54f)

• feat: Add compatibility with CRAM (638e7e9)

• feat: consensus_vcf now works with different number of variants (5e1696f)

• feat: Add submodules (cd4bcda)

• feat: Add source code (888f1f5)

Fix

• fix: Fix missing rg_name (8a09a0b)

• fix: Fix read group sample editing (edb5aa0)

• fix: Fix TRN in resize_variants.py (c13ee7a)

• fix: Fix missing TRN in consensus_vcf.py (178472a)

• fix: Add RG tag if missing (a6d3493)

• fix: Fix consensus_vcf.py script (061f27c)

Performance

• perf: Paralelize alignment_splitter.py (e3f3e6c)

Unknown

• deps: Upgrade BAMSurgeon (57bca7d)

• deps: Remove variant-extractor from dependencies (e413534)