From bd977b7745a88c85740014d4e5f950475924ab76 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Fri, 7 Nov 2025 17:30:16 -0500 Subject: [PATCH 01/22] add DeHaEtal25 --- cdl.bib | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/cdl.bib b/cdl.bib index 09e622d..347cbab 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,16 @@ +@article{DeHaEtal25, + abstract = {Episodic memory depends upon activity distributed across the brain. However, the activity underlying memory has largely been examined within single tasks in isolation. Thus it is unclear to what extent prior findings reflect task-general rather than memory-specific cognitive processes. Here we address this question using data from 371 patients recorded intracranially who performed a free recall task with encoding and retrieval phases alongside an arithmetic distractor phase. We ask whether neural decoders fit to predict behavior from one phase transfer to the others. Encoding-retrieval transfer exceeds both arithmetic-encoding and arithmetic-retrieval transfer and therefore cannot be explained solely by processes supporting arithmetic. We further detect transfer between arithmetic and retrieval but not between arithmetic and encoding. The brain-behavioral relations observed in these tasks thus do not merely reflect a single task-general factor of activity. We propose cross-task decoding as a method for identifying the neural factor structure underlying distinct cognitive processes.Competing Interest StatementThe authors have declared no competing interest.National Institute of Mental Health, https://ror.org/04xeg9z08, R01 MH055687}, + author = {R D DeHaan and Y Ezzyat and M J Randazzo and A M Rao and A M Papanastassiou and A S Geller and B C Lega and J P Aronson and R E Gross and B C Jobst and K A Zaghloul and G A Worrell and S A Sheth and M R Sperling and M J Kahana}, + date-added = {2025-11-06 16:33:49 -0500}, + date-modified = {2025-11-06 16:49:18 -0500}, + journal = {bioRxiv}, + month = {July}, + title = {Neural components underlying successful free recall are specific to episodic memory}, + volume = {10.1101/2025.07.25.666835}, + year = {2025}} + @article{BarrEtal13, abstract = {Linear mixed-effects models (LMEMs) have become increasingly prominent in psycholinguistics and related areas. However, many researchers do not seem to appreciate how random effects structures affect the generalizability of an analysis. Here, we argue that researchers using LMEMs for confirmatory hypothesis testing should minimally adhere to the standards that have been in place for many decades. Through theoretical arguments and Monte Carlo simulation, we show that LMEMs generalize best when they include the maximal random effects structure justified by the design. The generalization performance of LMEMs including data-driven random effects structures strongly depends upon modeling criteria and sample size, yielding reasonable results on moderately-sized samples when conservative criteria are used, but with little or no power advantage over maximal models. Finally, random-intercepts-only LMEMs used on within-subjects and/or within-items data from populations where subjects and/or items vary in their sensitivity to experimental manipulations always generalize worse than separate F1 and F2 tests, and in many cases, even worse than F1 alone. Maximal LMEMs should be the `gold standard' for confirmatory hypothesis testing in psycholinguistics and beyond.}, author = {Dale J. Barr and Roger Levy and Christoph Scheepers and Harry J. Tily}, From bf17108dbea237564c6bcd6daaafe9a9626454a0 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Mon, 10 Nov 2025 15:31:04 -0500 Subject: [PATCH 02/22] add FranLiu18, RaccEtal24, NastEtal21 --- cdl.bib | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/cdl.bib b/cdl.bib index 347cbab..1c18ef4 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,37 @@ +@article{FranLiu18, + author = {M C Frank and L Liu}, + doi = {10.31234/osf.io/bucqx}, + journal = {{PsyArXiv}}, + month = {December}, + title = {Modeling classroom teaching as optimal communication}, + year = {2018}} + +@article{RaccEtal24, + author = {O Raccah and P Chen and T M Gureckis and D Poeppel and V A Vo}, + doi = {10.1038/s41597-024-04082-6}, + journal = {Scientific Data}, + month = {December}, + number = {1}, + pages = {1317}, + title = {The "Naturalistic Free Recall" dataset: four stories, hundreds of participants, and high-fidelity transcriptions}, + url = {https://doi.org/10.1038/s41597-024-04082-6}, + volume = {11}, + year = {2024}} + +@article{NastEtal21, + author = {S A Nastase and Y Liu and H Hillman and A Zadbood and L Hasenfratz and N Keshavarzian and J Chen and C J Honey and Y Yeshurun and M Regev and M Nguyen and C H C Chang and C Baldassano and O Lositsky and E Simony and M A Chow and Y C Leong and P P Brooks and E Micciche and G Choe and A Goldstein and T Vanderwal and Y O Halchenko and K A Norman and U Hasson}, + doi = {10.1038/s41597-021-01033-3}, + journal = {Scientific Data}, + month = {September}, + number = {1}, + pages = {250}, + title = {The "Narratives" fMRI dataset for evaluating models of naturalistic language comprehension}, + url = {https://doi.org/10.1038/s41597-021-01033-3}, + volume = {8}, + year = {2021}} + @article{DeHaEtal25, abstract = {Episodic memory depends upon activity distributed across the brain. However, the activity underlying memory has largely been examined within single tasks in isolation. Thus it is unclear to what extent prior findings reflect task-general rather than memory-specific cognitive processes. Here we address this question using data from 371 patients recorded intracranially who performed a free recall task with encoding and retrieval phases alongside an arithmetic distractor phase. We ask whether neural decoders fit to predict behavior from one phase transfer to the others. Encoding-retrieval transfer exceeds both arithmetic-encoding and arithmetic-retrieval transfer and therefore cannot be explained solely by processes supporting arithmetic. We further detect transfer between arithmetic and retrieval but not between arithmetic and encoding. The brain-behavioral relations observed in these tasks thus do not merely reflect a single task-general factor of activity. We propose cross-task decoding as a method for identifying the neural factor structure underlying distinct cognitive processes.Competing Interest StatementThe authors have declared no competing interest.National Institute of Mental Health, https://ror.org/04xeg9z08, R01 MH055687}, author = {R D DeHaan and Y Ezzyat and M J Randazzo and A M Rao and A M Papanastassiou and A S Geller and B C Lega and J P Aronson and R E Gross and B C Jobst and K A Zaghloul and G A Worrell and S A Sheth and M R Sperling and M J Kahana}, From 55f549bbaf9984391cef3030a585c91c692a903a Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Mon, 10 Nov 2025 15:31:26 -0500 Subject: [PATCH 03/22] remove abstract, date-added, & date-modified fields --- cdl.bib | 28 ---------------------------- 1 file changed, 28 deletions(-) diff --git a/cdl.bib b/cdl.bib index 1c18ef4..1580fba 100644 --- a/cdl.bib +++ b/cdl.bib @@ -33,10 +33,7 @@ @article{NastEtal21 year = {2021}} @article{DeHaEtal25, - abstract = {Episodic memory depends upon activity distributed across the brain. However, the activity underlying memory has largely been examined within single tasks in isolation. Thus it is unclear to what extent prior findings reflect task-general rather than memory-specific cognitive processes. Here we address this question using data from 371 patients recorded intracranially who performed a free recall task with encoding and retrieval phases alongside an arithmetic distractor phase. We ask whether neural decoders fit to predict behavior from one phase transfer to the others. Encoding-retrieval transfer exceeds both arithmetic-encoding and arithmetic-retrieval transfer and therefore cannot be explained solely by processes supporting arithmetic. We further detect transfer between arithmetic and retrieval but not between arithmetic and encoding. The brain-behavioral relations observed in these tasks thus do not merely reflect a single task-general factor of activity. We propose cross-task decoding as a method for identifying the neural factor structure underlying distinct cognitive processes.Competing Interest StatementThe authors have declared no competing interest.National Institute of Mental Health, https://ror.org/04xeg9z08, R01 MH055687}, author = {R D DeHaan and Y Ezzyat and M J Randazzo and A M Rao and A M Papanastassiou and A S Geller and B C Lega and J P Aronson and R E Gross and B C Jobst and K A Zaghloul and G A Worrell and S A Sheth and M R Sperling and M J Kahana}, - date-added = {2025-11-06 16:33:49 -0500}, - date-modified = {2025-11-06 16:49:18 -0500}, journal = {bioRxiv}, month = {July}, title = {Neural components underlying successful free recall are specific to episodic memory}, @@ -44,10 +41,7 @@ @article{DeHaEtal25 year = {2025}} @article{BarrEtal13, - abstract = {Linear mixed-effects models (LMEMs) have become increasingly prominent in psycholinguistics and related areas. However, many researchers do not seem to appreciate how random effects structures affect the generalizability of an analysis. Here, we argue that researchers using LMEMs for confirmatory hypothesis testing should minimally adhere to the standards that have been in place for many decades. Through theoretical arguments and Monte Carlo simulation, we show that LMEMs generalize best when they include the maximal random effects structure justified by the design. The generalization performance of LMEMs including data-driven random effects structures strongly depends upon modeling criteria and sample size, yielding reasonable results on moderately-sized samples when conservative criteria are used, but with little or no power advantage over maximal models. Finally, random-intercepts-only LMEMs used on within-subjects and/or within-items data from populations where subjects and/or items vary in their sensitivity to experimental manipulations always generalize worse than separate F1 and F2 tests, and in many cases, even worse than F1 alone. Maximal LMEMs should be the `gold standard' for confirmatory hypothesis testing in psycholinguistics and beyond.}, author = {Dale J. Barr and Roger Levy and Christoph Scheepers and Harry J. Tily}, - date-added = {2024-02-20 10:18:31 -0500}, - date-modified = {2024-02-20 10:18:52 -0500}, doi = {https://doi.org/10.1016/j.jml.2012.11.001}, journal = {Journal of Memory and Language}, number = {3}, @@ -57,10 +51,7 @@ @article{BarrEtal13 year = {2013}} @article{MatuEtal17, - abstract = {Linear mixed-effects models have increasingly replaced mixed-model analyses of variance for statistical inference in factorial psycholinguistic experiments. Although LMMs have many advantages over ANOVA, like ANOVAs, setting them up for data analysis also requires some care. One simple option, when numerically possible, is to fit the full variance-covariance structure of random effects (the maximal model; Barr, Levy, Scheepers & Tily, 2013), presumably to keep Type I error down to the nominal α in the presence of random effects. Although it is true that fitting a model with only random intercepts may lead to higher Type I error, fitting a maximal model also has a cost: it can lead to a significant loss of power. We demonstrate this with simulations and suggest that for typical psychological and psycholinguistic data, higher power is achieved without inflating Type I error rate if a model selection criterion is used to select a random effect structure that is supported by the data.}, author = {Hannes Matuschek and Reinhold Kliegl and Shravan Vasishth and Harald Baayen and Douglas Bates}, - date-added = {2024-02-19 23:26:49 -0500}, - date-modified = {2024-02-19 23:27:20 -0500}, doi = {https://doi.org/10.1016/j.jml.2017.01.001}, journal = {Journal of Memory and Language}, pages = {305-315}, @@ -70,8 +61,6 @@ @article{MatuEtal17 @article{BateEtal15b, author = {Douglas Bates and Reinhold Kliegl and Shravan Vasishth and Harald Baayen}, - date-added = {2024-02-19 22:18:43 -0500}, - date-modified = {2024-02-19 22:26:28 -0500}, journal = {{arXiv}}, title = {Parsimonious Mixed Models}, volume = {1506.04967}, @@ -79,7 +68,6 @@ @article{BateEtal15b @article{BateEtal15a, author = {Douglas Bates and Martin M{\"a}chler and Ben Bolker and Steve Walker}, - date-modified = {2024-02-19 22:26:37 -0500}, doi = {10.18637/jss.v067.i01}, journal = {Journal of Statistical Software}, number = {1}, @@ -90,8 +78,6 @@ @article{BateEtal15a @article{MartEtal18, author = {J L Martinez-Rodrigues and I Lopez-Arevalo and A B Rios-Alvarado}, - date-added = {2025-08-02 00:51:30 -0400}, - date-modified = {2025-08-02 00:51:30 -0400}, journal = {Expert Systems with Applications}, pages = {339--355}, title = {{OpenIE}-based approach for knowledge graph construction from text}, @@ -100,8 +86,6 @@ @article{MartEtal18 @article{ZhanEtal18b, author = {Y Zhang and H Dai and Z Kozereva and A Smola and L Song}, - date-added = {2025-08-02 00:50:52 -0400}, - date-modified = {2025-08-02 00:50:52 -0400}, journal = {Proceedings of the {AAAI} Conference on Artificial Intelligence}, number = {1}, pages = {doi.org/10.1609/aaai.v32i1.12057}, @@ -111,8 +95,6 @@ @article{ZhanEtal18b @article{GuoEtal20, author = {Q Guo and F Zhuang and C Qin and H Zhu and X Xie and H Xiong and Q He}, - date-added = {2025-08-02 00:50:39 -0400}, - date-modified = {2025-08-02 00:50:39 -0400}, journal = {{IEEE} {Xplore}}, number = {8}, pages = {3549--3568}, @@ -122,8 +104,6 @@ @article{GuoEtal20 @article{XionEtal17, author = {C Xiong and R Power and J Callan}, - date-added = {2025-08-02 00:50:29 -0400}, - date-modified = {2025-08-02 00:50:29 -0400}, journal = {{WWW} '17: Proceedings of the 26th International Conference on World Wide Web}, pages = {1271--1279}, title = {Explicit semantic ranking for academic search via knowledge graph embedding}, @@ -131,8 +111,6 @@ @article{XionEtal17 @article{WeisEtal16, author = {K Weiss and T M Khoshgoftaar and D D Wang}, - date-added = {2025-08-02 00:50:10 -0400}, - date-modified = {2025-08-02 00:50:10 -0400}, journal = {Journal of Big Data}, number = {9}, pages = {doi.org/10.1186/s40537-016-0043-6}, @@ -142,8 +120,6 @@ @article{WeisEtal16 @article{ClanEtal19, author = {R Clancy and I F Ilyas and J Lin}, - date-added = {2025-08-02 00:49:40 -0400}, - date-modified = {2025-08-02 00:49:40 -0400}, journal = {Proceedings of the Second Workshop on Fact Extraction and VERification (FEVER)}, pages = {39--46}, title = {Scalable knowledge graph construction from text collections}, @@ -151,8 +127,6 @@ @article{ClanEtal19 @article{MartiEtal18, author = {J L Martinez-Rodrigues and I Lopez-Arevalo and A B Rios-Alvarado}, - date-added = {2025-08-02 00:49:20 -0400}, - date-modified = {2025-08-02 00:49:20 -0400}, journal = {Expert Systems with Applications}, pages = {339--355}, title = {{OpenIE}-based approach for knowledge graph construction from text}, @@ -161,8 +135,6 @@ @article{MartiEtal18 @article{AgraEtal22, author = {G Agrawal and Y Deng and J Park and H Liu and Y-C Chen}, - date-added = {2025-08-02 00:49:05 -0400}, - date-modified = {2025-08-02 00:49:05 -0400}, journal = {Information}, number = {11}, pages = {doi.org/10.3390/info13110526}, From d618e1f0ce0ef851a2defab93126e61383622b2c Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Mon, 10 Nov 2025 18:07:41 -0500 Subject: [PATCH 04/22] add ChenEtal24, SumeEtal23, AvraEtal97, ShafGood08 --- cdl.bib | 40 ++++++++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/cdl.bib b/cdl.bib index 1580fba..8112534 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,45 @@ +@inproceedings{ShafGood08, + author = {P Shafto and N Goodman}, + booktitle = {Proceedings of the 30th annual conference of the Cognitive Science Society}, + organization = {Cognitive Science Society Austin, TX}, + pages = {1632--1637}, + title = {Teaching games: Statistical sampling assumptions for learning in pedagogical situations}, + year = {2008}} + +@article{AvraEtal97, + author = {J Avrahami and Y Kareev and Y Bogot and R Caspi and S Dunaevsky and S Lerner}, + doi = {10.1080/713755719}, + journal = {The Quarterly Journal of Experimental Psychology Section A}, + month = {August}, + number = {3}, + pages = {586--606}, + title = {Teaching by examples: Implications for the process of category acquisition}, + volume = {50}, + year = {1997}} + +@article{SumeEtal23, + author = {T R Sumers and M K Ho and R D Hawkins and T L Griffiths}, + doi = {10.1016/j.cognition.2022.105326}, + journal = {Cognition}, + month = {March}, + pages = {105326}, + title = {Show or tell? Exploring when (and why) teaching with language outperforms demonstration}, + volume = {232}, + year = {2023}} + +@article{ChenEtal24, + author = {A M Chen and A Palacci and N V{\'e}lez and R D Hawkins and S J Gershman}, + doi = {10.1111/cogs.13477}, + journal = {Cognitive Science}, + month = {July}, + number = {7}, + pages = {e13477}, + title = {A hierarchical bayesian model of adaptive teaching}, + volume = {48}, + year = {2024}} + @article{FranLiu18, author = {M C Frank and L Liu}, doi = {10.31234/osf.io/bucqx}, From 106f9d8ca3652bee40301cf3a08a0de40a0cca6c Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Mon, 10 Nov 2025 19:38:36 -0500 Subject: [PATCH 05/22] add ShafEtal14 --- cdl.bib | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/cdl.bib b/cdl.bib index 8112534..d76c88c 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,15 @@ +@article{ShafEtal14, + author = {P shafto and N D Goodman and T L Griffiths}, + doi = {10.1016/j.cogpsych.2013.12.004}, + journal = {Cognitive Psychology}, + month = {June}, + pages = {55--89}, + title = {A rational account of pedagogical reasoning: Teaching by, and learning from, examples}, + volume = {71}, + year = {2014}} + @inproceedings{ShafGood08, author = {P Shafto and N Goodman}, booktitle = {Proceedings of the 30th annual conference of the Cognitive Science Society}, From 769c1036342859c6b46a775714eabe30fefccd43 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Mon, 10 Nov 2025 20:27:00 -0500 Subject: [PATCH 06/22] add ChiEtal01, ChiEtal08 --- cdl.bib | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/cdl.bib b/cdl.bib index d76c88c..ec56179 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,29 @@ +@article{ChiEtal01, + author = {M T H Chi and S A Siler and H Jeong and T Yamauchi and R G M Hausmann}, + date-added = {2025-11-10 19:50:22 -0500}, + date-modified = {2025-11-10 19:51:39 -0500}, + doi = {10.1207/s15516709cog2504_1}, + journal = {Cognitive Science}, + month = {July}, + number = {4}, + pages = {471--533}, + title = {Learning from human tutoring}, + volume = {25}, + year = {2001}} + +@article{ChiEtal08, + author = {M T H Chi and M Roy and R G M Hausmann}, + doi = {10.1080/03640210701863396}, + journal = {Cognitive Science}, + month = {March}, + number = {2}, + pages = {301--341}, + title = {Observing tutorial dialogues collaboratively: Insights about human tutoring effectiveness from vicarious learning}, + volume = {32}, + year = {2008}} + @article{ShafEtal14, author = {P shafto and N D Goodman and T L Griffiths}, doi = {10.1016/j.cogpsych.2013.12.004}, From 561d7ba2d138fb645075c475198a286f8468addf Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Mon, 10 Nov 2025 21:05:53 -0500 Subject: [PATCH 07/22] add KaraEtal21, vandEtal11 --- cdl.bib | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/cdl.bib b/cdl.bib index 1ddfa0f..31c2edf 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,3 +1,26 @@ + + +@article{KaraEtal21, + author = {E Kara and M Tonin and M Vlassopoulos}, + doi = {10.1016/j.econedurev.2021.102104}, + journal = {Economics of Education Review}, + month = {June}, + pages = {102104}, + title = {Class size effects in higher education: Differences across STEM and non-STEM fields}, + volume = {82}, + year = {2021}} + +@article{vandEtal11, + author = {J {van de Pol} and M Volman and J Beishuizen}, + doi = {10.1016/j.learninstruc.2009.10.004}, + journal = {Learning and Instruction}, + month = {February}, + number = {1}, + pages = {46--57}, + title = {Patterns of contingent teaching in teacher--student interaction}, + volume = {21}, + year = {2011}} + @article{ChiEtal01, author = {M T H Chi and S A Siler and H Jeong and T Yamauchi and R G M Hausmann}, doi = {10.1207/s15516709cog2504_1}, From 33edd33b6107a06d04a6c49029bf430f3850fcba Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Tue, 11 Nov 2025 00:00:31 -0500 Subject: [PATCH 08/22] update MeshEtal20 -> MeshEtal21, add various manual capitalization --- cdl.bib | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/cdl.bib b/cdl.bib index 31c2edf..c88d3e2 100644 --- a/cdl.bib +++ b/cdl.bib @@ -44,7 +44,7 @@ @article{ChiEtal08 year = {2008}} @article{ShafEtal14, - author = {P shafto and N D Goodman and T L Griffiths}, + author = {P Shafto and N D Goodman and T L Griffiths}, doi = {10.1016/j.cogpsych.2013.12.004}, journal = {Cognitive Psychology}, month = {June}, @@ -78,7 +78,7 @@ @article{SumeEtal23 journal = {Cognition}, month = {March}, pages = {105326}, - title = {Show or tell? Exploring when (and why) teaching with language outperforms demonstration}, + title = {Show or tell? {E}xploring when (and why) teaching with language outperforms demonstration}, volume = {232}, year = {2023}} @@ -120,7 +120,7 @@ @article{NastEtal21 month = {September}, number = {1}, pages = {250}, - title = {The "Narratives" fMRI dataset for evaluating models of naturalistic language comprehension}, + title = {The "Narratives" {fMRI} dataset for evaluating models of naturalistic language comprehension}, url = {https://doi.org/10.1038/s41597-021-01033-3}, volume = {8}, year = {2021}} @@ -1264,14 +1264,15 @@ @article{TurnBrai15 volume = {33}, year = {2015}} -@article{MeshEtal20, +@article{MeshEtal21, author = {M Meshulam and L Hasenfratz and H Hillman and Y F Liu and M Nguyen and K A Norman and U Hasson}, + doi = {10.1038/s41467-021-22202-3}, journal = {Nature Communications}, - number = {1922}, - pages = {doi.org/10.1038/s41467-021-22202-3}, + number = {1}, + pages = {1922}, title = {Neural alignment predicts learning outcomes in students taking an introduction to computer science course}, volume = {12}, - year = {2020}} + year = {2021}} @article{NguyEtal22, author = {M Nguyen and A Chang and E Micciche and M Meshulam and S A Nastase and U Hasson}, From a659a2130ea5307de5864e041129d9b9bca84816 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Tue, 11 Nov 2025 12:33:27 -0500 Subject: [PATCH 09/22] manual caps in KaraEtal21 --- cdl.bib | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cdl.bib b/cdl.bib index c88d3e2..f9bd721 100644 --- a/cdl.bib +++ b/cdl.bib @@ -6,7 +6,7 @@ @article{KaraEtal21 journal = {Economics of Education Review}, month = {June}, pages = {102104}, - title = {Class size effects in higher education: Differences across STEM and non-STEM fields}, + title = {Class size effects in higher education: Differences across {STEM} and non-{STEM} fields}, volume = {82}, year = {2021}} From fd352f9d3509cee8492df4867a35fc8426b93cc4 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Tue, 11 Nov 2025 13:44:18 -0500 Subject: [PATCH 10/22] add NguyEtal19, YeshEtal21 --- cdl.bib | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/cdl.bib b/cdl.bib index f9bd721..63c3e0d 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,26 @@ +@article{YeshEtal21, + author = {Y Yeshurun and M Nguyen and U Hasson}, + doi = {10.1038/s41583-020-00420-w}, + journal = {Nature Reviews Neuroscience}, + month = {January}, + number = {3}, + pages = {181--192}, + title = {The default mode network: where the idiosyncratic self meets the shared social world}, + volume = {22}, + year = {2021}} + +@article{NguyEtal19, + author = {M Nguyen and T Vanderwal and U Hasson}, + doi = {10.1016/j.neuroimage.2018.09.010}, + journal = {{NeuroImage}}, + month = {January}, + pages = {161--170}, + title = {Shared understanding of narratives is correlated with shared neural response}, + volume = {184}, + year = {2019}} + @article{KaraEtal21, author = {E Kara and M Tonin and M Vlassopoulos}, doi = {10.1016/j.econedurev.2021.102104}, From ce3d21286a33af61eb9b8550a3671650430708ec Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Tue, 11 Nov 2025 17:01:22 -0500 Subject: [PATCH 11/22] add ZollEtal90 --- cdl.bib | 23 ++++++++++++++++++++++- 1 file changed, 22 insertions(+), 1 deletion(-) diff --git a/cdl.bib b/cdl.bib index 63c3e0d..b3403bf 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,26 @@ +@article{Zoll90, + author = {U Zoller}, + doi = {10.1002/tea.3660271011}, + journal = {Journal of Research in Science Teaching}, + month = {December}, + number = {10}, + pages = {1053--1065}, + title = {Students' misunderstandings and misconceptions in college freshman chemistry (general and organic)}, + volume = {27}, + year = {1990}} + +@article{Schr00b, + author = {G Schraw}, + doi = {10.1037/0022-0663.92.1.96}, + journal = {Journal of Educational Psychology}, + number = {1}, + pages = {96}, + title = {Reader beliefs and meaning construction in narrative text}, + volume = {92}, + year = {2000}} + @article{YeshEtal21, author = {Y Yeshurun and M Nguyen and U Hasson}, doi = {10.1038/s41583-020-00420-w}, @@ -6198,7 +6219,7 @@ @article{HaluEtal13 volume = {8}, year = {2013}} -@article{Schr00, +@article{Schr00a, author = {T Schreiber}, journal = {Physical Review Letters}, number = {2}, From 0c54fce4bfe4aa87075072342c2d312426fb3c9c Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Tue, 11 Nov 2025 17:04:23 -0500 Subject: [PATCH 12/22] update MayeEtal92 -> MayeEtal92a, add MayeEtal92b --- cdl.bib | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/cdl.bib b/cdl.bib index b3403bf..0bb6ead 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,14 @@ +@article{MayeEtal92b, + author = {R E Mayer and A B Lewis and M Hegarty}, + doi = {10.1016/S0166-4115(08)60886-9}, + journal = {Advances in Psychology}, + pages = {137--153}, + title = {Mathematical misunderstandings: Qualitative reasoning about quantitative problems}, + volume = {91}, + year = {1992}} + @article{Zoll90, author = {U Zoller}, doi = {10.1002/tea.3660271011}, @@ -32915,7 +32924,7 @@ @article{EichMetc89 volume = {15}, year = {1989}} -@article{MayeEtal92, +@article{MayeEtal92a, author = {John D Mayer and Yvonne N Gaschke and Debra L Braverman and Temperance W Evans}, journal = {Journal of Personality and Social Psychology}, number = {1}, From e682cd4c1842d85224dd98390c382b79372aa9c4 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Wed, 12 Nov 2025 13:37:07 -0500 Subject: [PATCH 13/22] add LindEtal21, AntoEtal24 --- cdl.bib | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/cdl.bib b/cdl.bib index 0bb6ead..6f98810 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,26 @@ +@article{AntoEtal24, + author = {J Antony and A Lozano and P Dhoat and J Chen and K Bennion}, + doi = {10.1162/jocn_a_02216}, + journal = {Journal of Cognitive Neuroscience}, + month = {November}, + number = {11}, + pages = {2368--2385}, + title = {Causal and chronological relationships predict memory organization for nonlinear narratives}, + volume = {36}, + year = {2024}} + +@article{LindEtal21, + author = {C A Lindbergh and N Walker and R {La Joie} and S Weiner-Light and A M Staffaroni and K B Casaletto and F Elahi and S M Walters and M You and D Cotter and B Asken and A C Apple and E Tsoy and J Neuhaus and C Fonseca and A Wolf and Y Cobigo and H Rosen and J H Kramer}, + doi = {10.1017/S1355617720001009}, + journal = {Journal of the International Neuropsychological Society}, + number = {4}, + pages = {382--388}, + title = {Worth the Wait: Delayed Recall after 1 Week Predicts Cognitive and Medial Temporal Lobe Trajectories in Older Adults}, + volume = {27}, + year = {2021}} + @article{MayeEtal92b, author = {R E Mayer and A B Lewis and M Hegarty}, doi = {10.1016/S0166-4115(08)60886-9}, From a555ee7ae4388624a93521b090302384b3d19298 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Thu, 13 Nov 2025 00:55:57 -0500 Subject: [PATCH 14/22] move doi to correct field in FitzEtal23 --- cdl.bib | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cdl.bib b/cdl.bib index 6f98810..c3cf842 100644 --- a/cdl.bib +++ b/cdl.bib @@ -771,8 +771,8 @@ @misc{MannEtal23b @article{FitzEtal23, author = {P C Fitzpatrick and A C Heusser and J R Manning}, + doi = {10.31234/osf.io/dh3q2}, journal = {{PsyArXiv}}, - pages = {doi.org/10.31234/osf.io/dh3q2}, title = {Text embedding models yield high-resolution insights into conceptual knowledge from short multiple-choice quizzes}, year = {2023}} From db38c80b94486e86ec9984f54fbabd48dc8dd1d8 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Fri, 14 Nov 2025 13:14:37 -0500 Subject: [PATCH 15/22] add Thor13 --- cdl.bib | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/cdl.bib b/cdl.bib index c3cf842..b97c739 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,13 @@ +@book{Thor13, + author = {E L Thorndike}, + doi = {10.1037/13051-000}, + publisher = {Teachers College, Columbia University}, + title = {Educational Psychology: The Psychology of Learning}, + volume = {2}, + year = {1913}} + @article{AntoEtal24, author = {J Antony and A Lozano and P Dhoat and J Chen and K Bennion}, doi = {10.1162/jocn_a_02216}, From dfadc4fd12cbe20f4e231738dabe2549d31ee120 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Fri, 14 Nov 2025 17:18:59 -0500 Subject: [PATCH 16/22] corrected MannEtal22 --- cdl.bib | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/cdl.bib b/cdl.bib index b97c739..3cfdae4 100644 --- a/cdl.bib +++ b/cdl.bib @@ -2903,9 +2903,11 @@ @article{DalgWatt90 @article{MannEtal22, author = {J R Manning and G M Notaro and E Chen and P C Fitzpatrick}, + doi = {10.1038/s41598-022-17781-0}, journal = {Scientific Reports}, - number = {13822}, - pages = {doi.org/10.1038/s41598-022-17781-0}, + month = {August}, + number = {1}, + pages = {13822}, title = {Fitness tracking reveals task-specific associations between memory, mental health, and physical activity}, volume = {12}, year = {2022}} From 22b14d81b4eea78bd17131c776cc37f5559ce271 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Fri, 14 Nov 2025 17:31:53 -0500 Subject: [PATCH 17/22] corrected NastEtal21, RaccEtal24 --- cdl.bib | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/cdl.bib b/cdl.bib index 3cfdae4..6f143c6 100644 --- a/cdl.bib +++ b/cdl.bib @@ -188,8 +188,7 @@ @article{RaccEtal24 month = {December}, number = {1}, pages = {1317}, - title = {The "Naturalistic Free Recall" dataset: four stories, hundreds of participants, and high-fidelity transcriptions}, - url = {https://doi.org/10.1038/s41597-024-04082-6}, + title = {The "{N}aturalistic {F}ree {R}ecall" dataset: four stories, hundreds of participants, and high-fidelity transcriptions}, volume = {11}, year = {2024}} @@ -200,8 +199,7 @@ @article{NastEtal21 month = {September}, number = {1}, pages = {250}, - title = {The "Narratives" {fMRI} dataset for evaluating models of naturalistic language comprehension}, - url = {https://doi.org/10.1038/s41597-021-01033-3}, + title = {The "{N}arratives" {fMRI} dataset for evaluating models of naturalistic language comprehension}, volume = {8}, year = {2021}} From 7ee038d16fecacca6bca6f3471d069d68adc6323 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Wed, 19 Nov 2025 13:30:49 -0500 Subject: [PATCH 18/22] add Rame72 --- cdl.bib | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/cdl.bib b/cdl.bib index 6f143c6..489932f 100644 --- a/cdl.bib +++ b/cdl.bib @@ -1,5 +1,16 @@ +@article{Rame72, + author = {U Ramer}, + doi = {10.1016/S0146-664X(72)80017-0}, + journal = {Computer Graphics and Image Processing}, + month = {November}, + number = {3}, + pages = {244--256}, + title = {An iterative procedure for the polygonal approximation of plane curves}, + volume = {1}, + year = {1972}} + @book{Thor13, author = {E L Thorndike}, doi = {10.1037/13051-000}, From e4af613315813157b9c613d3c1fc7296efe90005 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Fri, 21 Nov 2025 16:31:01 -0500 Subject: [PATCH 19/22] update FitzMann23 -> FitzMann24 --- cdl.bib | 14 +++++++++----- 1 file changed, 9 insertions(+), 5 deletions(-) diff --git a/cdl.bib b/cdl.bib index 489932f..df331ff 100644 --- a/cdl.bib +++ b/cdl.bib @@ -611,12 +611,16 @@ @article{HargEtal12 volume = {6}, year = {2012}} -@article{FitzMann23, +@article{FitzMann24, author = {P C Fitzpatrick and J R Manning}, - journal = {{arXiv}}, - title = {\texttt{Davos}: a {Python} ``smuggler'' for constructing lightweight reproducible notebooks}, - volume = {2211.15445}, - year = {2023}} + doi = {10.1016/j.softx.2023.101614}, + journal = {{SoftwareX}}, + month = {February}, + number = {Davos: A Python package ``smuggler'' for constructing lightweight reproducible notebooks PC Fitzpatrick, JR Manning SoftwareX 25, 101614}, + pages = {101614}, + title = {\texttt{Davos}: A {Python} package ``smuggler'' for constructing lightweight reproducible notebooks}, + volume = {25}, + year = {2024}} @article{PianHill22, author = {S T Piantadosi and F Hill}, From 725e9e7b147cf66be359926321ebb278044467b2 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Fri, 21 Nov 2025 16:34:09 -0500 Subject: [PATCH 20/22] fix doi in MannEtal23a --- cdl.bib | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/cdl.bib b/cdl.bib index df331ff..5f9665d 100644 --- a/cdl.bib +++ b/cdl.bib @@ -616,7 +616,6 @@ @article{FitzMann24 doi = {10.1016/j.softx.2023.101614}, journal = {{SoftwareX}}, month = {February}, - number = {Davos: A Python package ``smuggler'' for constructing lightweight reproducible notebooks PC Fitzpatrick, JR Manning SoftwareX 25, 101614}, pages = {101614}, title = {\texttt{Davos}: A {Python} package ``smuggler'' for constructing lightweight reproducible notebooks}, volume = {25}, @@ -799,8 +798,8 @@ @article{FitzEtal23 @article{MannEtal23a, author = {J R Manning and E C Whitaker and P C Fitzpatrick and M R Lee and A M Frantz and B J Bollinger and D Romanova and C E Field and A C Heusser}, + doi = {10.31234/osf.io/erzfp}, journal = {{PsyArXiv}}, - pages = {doi.org/10.31234/osf.io/erzfp}, title = {Feature and order manipulations in a free recall task affect memory for current and future lists}, year = {2023}} From 66c30fc0c7543914563e3f5c8dc05fb91b2131eb Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Fri, 21 Nov 2025 17:46:13 -0500 Subject: [PATCH 21/22] fix quotes in RaccEtal24 title --- cdl.bib | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cdl.bib b/cdl.bib index 5f9665d..2c8cd20 100644 --- a/cdl.bib +++ b/cdl.bib @@ -199,7 +199,7 @@ @article{RaccEtal24 month = {December}, number = {1}, pages = {1317}, - title = {The "{N}aturalistic {F}ree {R}ecall" dataset: four stories, hundreds of participants, and high-fidelity transcriptions}, + title = {The ``{N}aturalistic {F}ree {R}ecall'' dataset: four stories, hundreds of participants, and high-fidelity transcriptions}, volume = {11}, year = {2024}} From 4d3f8e87d16213abe663ce44fc18695a370df5d6 Mon Sep 17 00:00:00 2001 From: paxtonfitzpatrick Date: Fri, 21 Nov 2025 17:48:23 -0500 Subject: [PATCH 22/22] fix quotes in NastEtal21 title --- cdl.bib | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cdl.bib b/cdl.bib index 2c8cd20..492870d 100644 --- a/cdl.bib +++ b/cdl.bib @@ -210,7 +210,7 @@ @article{NastEtal21 month = {September}, number = {1}, pages = {250}, - title = {The "{N}arratives" {fMRI} dataset for evaluating models of naturalistic language comprehension}, + title = {The ``{N}arratives'' {fMRI} dataset for evaluating models of naturalistic language comprehension}, volume = {8}, year = {2021}}