README.md

IntraTalkerPy

IntraTalkerPy combines two single-cell analysis workflows in one package:

• intratalkerpy.tf for transcription factor activity analysis and LR-to-TF workflows.
• intratalkerpy.perturbation for gene expression perturbation methods, utilities, and plotting.

Install the package from this repository root:

pip install .

Use the two analysis areas as separate modules:

from intratalkerpy import tf
from intratalkerpy import perturbation

result = tf.IntraTalker_analysis(...)
perturbation.mt.simulation_of_perturbation(...)