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Git hooks

This directory contains useful git hooks for developing in the repo on Linux and Mac systems. Copy the scripts in this directory to your git hooks directory (likely wcEcoli/.git/hooks/). Ensure that the hooks have execution permissions.

From the wcEcoli/ directory, run the following command to copy the scripts:

cp runscripts/git_hooks/*[^.md] .git/hooks/

Hooks

  • post-checkout: Runs when performing git checkout to a different branch
  • post-merge: Runs when merging commits

Scripts

  • wcm-env-check.sh: Called by post-checkout and post-merge to ensure an up to date environment for development. Does the following:
    • Remove any *.pyc files to prevent python executing these even if the corresponding *.py file has been removed.
    • make compile: ensure compiled code is up to date if changed
    • Show difference between packages in requirements.txt and those that are pip installed. Try pip installing missing or out of date packages if any are displayed.