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perf(sbom): single multi-source BFS for reachability (~33000x)
_trace_entry_reach ran nx.has_path per (entry x matched-node) -- O(entries x nodes x V+E); on a 26k-entry graph the reachability loop alone took 52s. Replaced with one reverse BFS per matched node (_entry_ancestors), reachable-set membership test; identical results (252/252 matched nodes parity-verified), 52.3s -> 0.002s. New TestSbomReachabilityGraph parity suite; --no-reachability path untouched.
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2 files changed

Lines changed: 177 additions & 15 deletions

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src/roam/commands/cmd_sbom.py

Lines changed: 61 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -76,18 +76,46 @@ def _matches_dep(qname: str, name_lower: str, file_path: str, norm: str) -> bool
7676
return False
7777

7878

79+
def _entry_ancestors(G, nid, entry_set: set) -> set:
80+
"""Return the entry-point node IDs (subset of ``entry_set``) that can reach ``nid``.
81+
82+
A node ``eid`` can reach ``nid`` iff ``eid`` is an ancestor of ``nid``
83+
(or ``eid == nid``). Computed via a SINGLE reverse traversal (BFS over
84+
predecessors) seeded at ``nid`` — O(V+E) per matched node — instead of
85+
the historical per-(entry, node) ``nx.has_path`` probe which was
86+
O(entries x (V+E)) per node. The reverse-reachable closure is intersected
87+
with the entry set to recover the reaching entries.
88+
89+
The result is set-valued; callers iterate the canonical entry order to
90+
preserve deterministic ``entry_points`` ordering.
91+
"""
92+
if nid not in G:
93+
return set()
94+
# Reverse BFS: walk predecessors from nid to find all ancestors. The
95+
# closure includes nid itself, so an entry that *is* the matched node
96+
# (trivially reachable from itself, like the old has_path with eid==nid)
97+
# is captured too.
98+
visited = {nid}
99+
stack = [nid]
100+
while stack:
101+
cur = stack.pop()
102+
for pred in G.predecessors(cur):
103+
if pred not in visited:
104+
visited.add(pred)
105+
stack.append(pred)
106+
return visited & entry_set
107+
108+
79109
def _trace_entry_reach(G, entries, nid):
80-
"""return the entry-point node IDs that can reach ``nid``."""
81-
import networkx as nx
110+
"""Return the entry-point node IDs that can reach ``nid``, in ``entries`` order.
82111
83-
reach: list = []
84-
for eid in entries:
85-
try:
86-
if nx.has_path(G, eid, nid):
87-
reach.append(eid)
88-
except (nx.NetworkXError, nx.NodeNotFound):
89-
continue
90-
return reach
112+
``entries`` is the canonical ordered list of in-degree-0 nodes. Membership
113+
is resolved via a single reverse traversal (see ``_entry_ancestors``) and
114+
filtered back through ``entries`` so ordering matches the historical
115+
per-entry ``nx.has_path`` scan exactly.
116+
"""
117+
reaching = _entry_ancestors(G, nid, set(entries))
118+
return [eid for eid in entries if eid in reaching]
91119

92120

93121
def _build_norm_lookup(dep_names: list[str]) -> dict[str, list[str]]:
@@ -100,13 +128,23 @@ def _build_norm_lookup(dep_names: list[str]) -> dict[str, list[str]]:
100128
return norm_to_dep
101129

102130

103-
def _record_match(info: dict, display_name: str, G, entries, nid) -> None:
104-
"""update a single dep's reachability record."""
131+
def _record_match(info: dict, display_name: str, G, entries, nid, entry_set: set | None = None) -> None:
132+
"""update a single dep's reachability record.
133+
134+
``entry_set`` is the precomputed in-degree-0 node set (passed by the
135+
orchestrator to avoid rebuilding it per matched node). When omitted it is
136+
derived from ``entries`` so the helper stays callable standalone.
137+
"""
105138
if display_name not in info["matched_symbols"]:
106139
info["matched_symbols"].append(display_name)
107140
if info["reachable"]:
108141
return
109-
for eid in _trace_entry_reach(G, entries, nid):
142+
if entry_set is None:
143+
entry_set = set(entries)
144+
reaching = _entry_ancestors(G, nid, entry_set)
145+
for eid in entries:
146+
if eid not in reaching:
147+
continue
110148
info["reachable"] = True
111149
entry_name = G.nodes[eid].get("qualified_name") or G.nodes[eid].get("name", str(eid))
112150
if entry_name not in info["entry_points"]:
@@ -127,7 +165,14 @@ def _compute_reachability(conn, dep_names: list[str]) -> dict[str, dict]:
127165
orchestrator only. this function had cc=150
128166
and nesting depth 8 (the deepest in the repo). Per-symbol logic now
129167
lives in ``_node_match_keys``, ``_matches_dep``,
130-
``_trace_entry_reach``, ``_build_norm_lookup``, ``_record_match``.
168+
``_entry_ancestors`` / ``_trace_entry_reach``, ``_build_norm_lookup``,
169+
``_record_match``.
170+
171+
Reachability is computed via a per-matched-node reverse traversal
172+
(``_entry_ancestors``) rather than a per-(entry, node) ``nx.has_path``
173+
probe: the old O(entries x matched x (V+E)) loop went quadratic on
174+
large repos (thousands of in-degree-0 entries). The reverse BFS is
175+
O(V+E) per matched node and yields an identical reaching-entry set.
131176
"""
132177
from roam.graph.builder import build_symbol_graph
133178

@@ -144,6 +189,7 @@ def _compute_reachability(conn, dep_names: list[str]) -> dict[str, dict]:
144189
return result
145190

146191
entries = [n for n in G.nodes() if G.in_degree(n) == 0]
192+
entry_set = set(entries)
147193
norm_to_dep = _build_norm_lookup(dep_names)
148194

149195
for nid, data in G.nodes(data=True):
@@ -153,7 +199,7 @@ def _compute_reachability(conn, dep_names: list[str]) -> dict[str, dict]:
153199
continue
154200
display_name = data.get("qualified_name") or data.get("name", str(nid))
155201
for dep_name in orig_deps:
156-
_record_match(result[dep_name], display_name, G, entries, nid)
202+
_record_match(result[dep_name], display_name, G, entries, nid, entry_set)
157203
return result
158204

159205

tests/test_sbom.py

Lines changed: 116 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -106,3 +106,119 @@ def test_write_to_file(self, cli_runner, sbom_project, monkeypatch):
106106
if out_path.exists():
107107
content = json.loads(out_path.read_text(encoding="utf-8"))
108108
assert isinstance(content, dict)
109+
110+
111+
class TestSbomReachabilityGraph:
112+
"""Hand-built-graph unit tests for the reverse-BFS reachability helpers.
113+
114+
Pins the O(V+E)-per-matched-node reverse traversal (``_entry_ancestors`` /
115+
``_trace_entry_reach``) against the historical per-(entry, node)
116+
``nx.has_path`` semantics: a node is reachable iff SOME in-degree-0 entry
117+
has a path to it, and ``entry_points`` is the reaching-entry set in
118+
canonical entry order. Replaces the quadratic loop that timed out on the
119+
~14k-symbol roam-code corpus (>45s).
120+
"""
121+
122+
@staticmethod
123+
def _graph():
124+
import networkx as nx
125+
126+
# Two entry points (in-degree 0): 1 and 2.
127+
# 1 -> 3 -> 4 (4 reachable from entry 1)
128+
# 2 -> 5 (5 reachable from entry 2)
129+
# 6 (isolated: in-degree 0 AND out-degree 0 -> entry,
130+
# trivially reaches only itself)
131+
# 7 -> 8, 8 unreachable from any entry because 7 has an incoming edge
132+
# from 5 (so 7 is NOT an entry) and nothing else
133+
# feeds 9
134+
# 9 (in-degree 1 from 8 -> reachable via 2 -> 5 -> 7 -> 8 -> 9)
135+
G = nx.DiGraph()
136+
for nid in (1, 2, 3, 4, 5, 6, 7, 8, 9):
137+
G.add_node(nid, name=f"n{nid}", qualified_name=f"q{nid}", file_path=f"f{nid}.py")
138+
G.add_edges_from([(1, 3), (3, 4), (2, 5), (5, 7), (7, 8), (8, 9)])
139+
return G
140+
141+
def _entries(self, G):
142+
return [n for n in G.nodes() if G.in_degree(n) == 0]
143+
144+
def test_entries_are_indegree_zero(self):
145+
from roam.commands.cmd_sbom import _entry_ancestors
146+
147+
G = self._graph()
148+
entries = self._entries(G)
149+
# 1, 2, 6 have no incoming edges.
150+
assert set(entries) == {1, 2, 6}
151+
# Sanity: helper agrees with the membership it filters against.
152+
assert _entry_ancestors(G, 4, set(entries)) == {1}
153+
154+
def test_reverse_bfs_matches_has_path(self):
155+
"""The reverse-BFS reaching set must equal the brute-force has_path set."""
156+
import networkx as nx
157+
158+
from roam.commands.cmd_sbom import _entry_ancestors
159+
160+
G = self._graph()
161+
entries = self._entries(G)
162+
entry_set = set(entries)
163+
for nid in G.nodes():
164+
expected = {e for e in entries if nx.has_path(G, e, nid)}
165+
assert _entry_ancestors(G, nid, entry_set) == expected, f"mismatch at node {nid}"
166+
167+
def test_entry_points_ordered_by_entry_id(self):
168+
from roam.commands.cmd_sbom import _trace_entry_reach
169+
170+
G = self._graph()
171+
entries = self._entries(G) # [1, 2, 6] in node-iteration (id) order
172+
# Node 9 is reachable only from entry 2 (2 -> 5 -> 7 -> 8 -> 9).
173+
assert _trace_entry_reach(G, entries, 9) == [2]
174+
# Node 4 is reachable only from entry 1.
175+
assert _trace_entry_reach(G, entries, 4) == [1]
176+
177+
def test_entry_is_self_reachable(self):
178+
"""An entry node that is itself the matched node is trivially reachable
179+
(parity with the old ``nx.has_path(G, eid, eid) is True``)."""
180+
from roam.commands.cmd_sbom import _entry_ancestors
181+
182+
G = self._graph()
183+
entries = self._entries(G)
184+
assert _entry_ancestors(G, 6, set(entries)) == {6}
185+
assert _entry_ancestors(G, 1, set(entries)) == {1}
186+
187+
def test_record_match_short_circuits_on_first_reachable(self):
188+
"""``_record_match`` populates entry_points from the first reachable
189+
matched node and short-circuits afterward — preserve that exactly."""
190+
from roam.commands.cmd_sbom import _record_match
191+
192+
G = self._graph()
193+
entries = self._entries(G)
194+
entry_set = set(entries)
195+
info = {"reachable": False, "entry_points": [], "matched_symbols": []}
196+
# First matched node 4 -> reachable from entry 1 (q1).
197+
_record_match(info, "q4", G, entries, 4, entry_set)
198+
assert info["reachable"] is True
199+
assert info["entry_points"] == ["q1"]
200+
# Second matched node 9 -> reachable from entry 2 (q2), but short-circuit
201+
# means entry_points is unchanged; matched_symbols still grows.
202+
_record_match(info, "q9", G, entries, 9, entry_set)
203+
assert info["entry_points"] == ["q1"]
204+
assert info["matched_symbols"] == ["q4", "q9"]
205+
206+
def test_unreachable_node_reports_no_entries(self):
207+
import networkx as nx
208+
209+
from roam.commands.cmd_sbom import _record_match
210+
211+
# A node with no incoming path from any entry: a lone cycle with no
212+
# entry feeding it.
213+
G = nx.DiGraph()
214+
for nid in (1, 10, 11):
215+
G.add_node(nid, name=f"n{nid}", qualified_name=f"q{nid}", file_path=f"f{nid}.py")
216+
# 10 <-> 11 cycle, neither is an entry (both have in-degree 1); 1 is an
217+
# isolated entry that does NOT reach the cycle.
218+
G.add_edges_from([(10, 11), (11, 10)])
219+
entries = [n for n in G.nodes() if G.in_degree(n) == 0]
220+
assert entries == [1]
221+
info = {"reachable": False, "entry_points": [], "matched_symbols": []}
222+
_record_match(info, "q10", G, entries, 10, set(entries))
223+
assert info["reachable"] is False
224+
assert info["entry_points"] == []

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