esm-1v-workflow

Workflow and supporting code for evaluating every amino acid human protein substitution using ESM-1v. A contribution to IGVF.

Name		Name	Last commit message	Last commit date
Latest commit History 78 Commits
chtc		chtc
container		container
igvf-submit		igvf-submit
local-test		local-test
synapse-upload		synapse-upload
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
build-combined-result-file.py		build-combined-result-file.py
count_sequences.py		count_sequences.py
download-ensembl-sequences.sh		download-ensembl-sequences.sh
download-models.sh		download-models.sh
download-protein-refseqs.sh		download-protein-refseqs.sh
environment.yml		environment.yml
prep-missing-fastas.py		prep-missing-fastas.py
process-mapped-results.submit		process-mapped-results.submit
process-missing-mane-bundles.submit		process-missing-mane-bundles.submit
process-results.py		process-results.py
process-results.sh		process-results.sh
verify-coverage.py		verify-coverage.py

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