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realmarcinclaude
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Regenerate community HTML and UMAP after recent additions (#54)
Refresh docs/ to reflect recent community additions and snippet repairs: - 20 modified community pages from the snippet-repair PRs and other curation updates. - 7 new community pages from communities added since last regen (Coastal Forested Wetland, Lake Washington, MUCC Freshwater Wetland, Mushroom Spring, Prairie Pothole, Thalassiosira/Marinobacter coculture, Wetland Oxygen/Sulfate GHG microcosm). - Refreshed docs/index.html and docs/community_umap.html (252 communities embedded, 3 host-only skipped). Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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docs/communities/Asgard_Wetland_Soil_Methanogenesis_Substrate_Community.html

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<div class="snippet">"expression of genes for [NiFe]-hydrogenases, pyruvate oxidation and carbon fixation via the Wood-Ljungdahl pathway"</div>
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<div class="snippet">"expression of genes..hydrogenases, pyruvate oxidation and carbon fixation via the Wood-Ljungdahl pathway"</div>
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docs/communities/Australian_Lead_Zinc_Polymetallic.html

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<a href="https://doi.org/10.1128/aem.00294-14"
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<div class="snippet">"This study investigated the spatial heterogeneity of bacterial and archaeal communities in the acidic mineral tailings at the Red Lake mine site, Ontario, Canada"</div>
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<div class="snippet">"pH is primarily responsible for structuring whole communities in the extreme and heterogeneous mine tailings"</div>
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docs/communities/BioModels_MODEL2204300001_Kefir_Community_Model.html

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<div class="snippet">"the metabolic cooperation between L. kefiranofaciens and L. mesenteroides is mediated by amino acids and small peptides liberated by proteolytic activity of L. kefiranofaciens, which in turn benefits from lactic acid produced by L. mesenteroides"</div>
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<div class="snippet">"early members open the niche for the followers by making available metabolites such as amino acids and lactate"</div>
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docs/communities/BioModels_MODEL2407300002_Sponge_Holobiont_Network.html

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<div class="snippet">"Eight genome-scale metabolic models representing seven bacterial and one archaeal species constructed and manually curated based on metagenome-assembled genomes"</div>
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<div class="snippet">"constraint-based, genome-scale metabolic networks for the microbiome of the sponge Stylissa sp."</div>
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<div class="snippet">"Eight genome-scale metabolic models representing seven bacterial and one archaeal species constructed and manually curated based on metagenome-assembled genomes"</div>
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<div class="snippet">"constraint-based, genome-scale metabolic networks for the microbiome of the sponge Stylissa sp."</div>
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docs/communities/Chromium_Sulfur_Reduction_Enrichment.html

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<div class="snippet">"A gram-positive, aerobic actinobacterium with high chromate [Cr(VI)]-reducing ability, designated strain Q5-1(T), was isolated from manganese mining s"</div>
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<div class="snippet">"actinobacterium isolated from manganese mining soil"</div>
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