Wire M-P coculture GEM paper into Methylomicrobium-Chlorella community (#63)

* Wire Badr/He/Wang M-P coculture GEM paper into Methylomicrobium-Chlorella

doi:10.20517/mrr.2023.70 (Badr/He/Wang 2023, "Probing interspecies
metabolic interactions within a synthetic binary microbiome using
genome-scale modeling") is an orphan cache that develops three
genome-scale modeling approaches - SteadyCom, dynamic FBA Lab, and
their new DynamiCom - on a methanotroph-photoautotroph (M-P)
coculture model system. Wire it as PARTIAL evidence on the
Methane-and-Carbon-Dioxide-Mitigation cross-feeding interaction in
the existing Methylomicrobium-Chlorella community: same kind of
methanotroph-microalga consortium as the curated record, and the
abstract directly speaks to "the metabolic interactions within the
coculture, how they contribute to the enhanced growth observed in
the coculture" - which is the central claim of that interaction.

PARTIAL because the modeled M-P system in the paper is generic
rather than the specific M. alcaliphilum 20Z + Chlorella HS2
pairing curated here.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* Address Copilot review on PR #63

- Move the GEM-modeling evidence off the Methane-and-Carbon-Dioxide-
  Mitigation interaction and onto Saline-Metabolic-Coupling-and-pH-
  Recovery. The paper's central claims are about metabolic coupling
  driving enhanced coculture growth, not CH4/CO2 mitigation or
  biomass carbon sequestration; the new placement aligns the
  evidence with what the snippet actually supports ("robust
  metabolic coupling between the two microbes" is the lead evidence
  on this interaction).
- Author/year correction: "Badr/He/Wang 2023" -> "Badr/He/Wang 2024"
  to match the journal's 2024-05-27 publication date in Crossref
  (the "2023" in the DOI path 10.20517/mrr.2023.70 is the
  volume/issue stamp, not the publication year).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

Author: realmarcin

kb/communities/Methylomicrobium_Chlorella_Methane_Sequestration_Coculture.yaml

@@ -237,6 +237,18 @@ ecological_interactions:
     evidence_source: IN_VITRO
     snippet: pH recovery above mild alkaline level was observed in co-cultures.
     explanation: Supports pH recovery as a coculture-level outcome.
+  - reference: doi:10.20517/mrr.2023.70
+    supports: PARTIAL
+    evidence_source: COMPUTATIONAL
+    snippet: methanotroph-photoautotroph (M-P) coculture..the metabolic interactions
+      within the coculture, how they contribute to the enhanced growth observed in the
+      coculture
+    explanation: Badr/He/Wang 2024 use a generic methanotroph-photoautotroph (M-P)
+      coculture as their model system and demonstrate via genome-scale modeling that the
+      mutualistic N-exchange between methanotroph and cyanobacteria explains enhanced
+      coculture growth - independent computational backing for "metabolic coupling between
+      the two microbes" claimed here. Partial because the modeled M-P system is generic
+      rather than the specific M. alcaliphilum 20Z + Chlorella HS2 pairing.
 environmental_factors:
 - name: Salinity
   value: above 3.0%