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realmarcinclaude
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Cite Marinobacter HP15 genome paper for diatom-aggregation evidence (#55)
The HP15 type-strain genome paper (doi:10.4056/sigs.922139, Gärdes et al. 2010, Stand Genomic Sci) directly describes HP15's specific attachment to diatom cells and in vitro aggregation of algal cells into marine snow particles. This is a perfect fit for the Bacteria-Dependent Diatom Aggregation interaction in the existing Thalassiosira-Marinobacter coculture community: it complements the two PMID:20827289 evidence items with an orthogonal source that characterizes HP15 itself rather than the aggregation assay. The cached abstract for this paper was previously an orphan references_cache file (committed alongside the literature-fetcher PMC fallback infrastructure but not referenced by any community). This wires it up to actual curated evidence. Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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kb/communities/Thalassiosira_Marinobacter_Marine_Snow_Coculture.yaml

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@@ -126,6 +126,14 @@ ecological_interactions:
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evidence_source: IN_VITRO
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snippet: T. weissflogii did not aggregate in axenic culture
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explanation: Supports the contrast between axenic diatom controls and bacteria-containing treatments.
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- reference: doi:10.4056/sigs.922139
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supports: SUPPORT
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evidence_source: IN_VITRO
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snippet: it showed specific attachment to diatom cells. In vitro it led to exopolymer
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formation and aggregation of these algal cells to form marine snow particles
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explanation: HP15 type-strain genome paper directly describes HP15's diatom-cell
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attachment and resulting exopolymer-mediated aggregation into marine snow particles,
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supporting the bacteria-dependent aggregation phenotype.
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- name: Transparent Exopolymer Particle Enhancement
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description: >
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M. adhaerens HP15 is linked to transparent exopolymeric particle formation

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