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realmarcinclaude
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Add growth conditions to 10 records + fix dark-mode contrast + regen pages
Deep-research growth-conditions sweep over the 45 records lacking any growth_media/cultivation_setup (via the add-growth-conditions skill + the new sweep runner). One agent per record extracted only source-backed conditions with verbatim evidence snippets; 35 records were correctly left unchanged (uncultured/metagenomic/computational/paywalled — no fabrication). Enriched (10): - ANME_SRB_Marine_Methane_Seep_Consortium (OA full text: anaerobic seawater microcosm, CH4 ± HPG, 4/24/50 C) - Chromium_Sulfur_Reduction_Enrichment (aerobic, pH 8, 30-37 C; dominant strain) - Phylogenetically_Diverse_Denitrifying_SynCom (marine broth 2216 + 20 mM NaNO3, anaerobic, 25 C; OA companion study, attributed) - BioModels_MODEL2209060002_DPigrum_SAureus (in silico SNM3 medium, COMPUTATIONAL) - Aerobic_Denitrification_Disturbance_SynCom, Aerobic_Denitrification_QQ_SynCom, Shewanella_Pseudomonas_Fe0_*, BSFL_Gut_SynCom, SynCom_BsBv_Cigar_*, Thermophilic_Lignocellulose_Composting_* (abstract-level conditions) Dark-mode contrast fix (community.html): preparation_notes, .interaction-flow, .evidence-item, and inline code hardcoded light backgrounds with no text color, rendering invisible (light-on-light) in dark mode — switched to theme variables. Regenerated all 295 community pages (+ browser/index): bakes in the dark-mode fix and syncs page content with already-merged #185 (GTDB), #187 (GO-term cleanup) and #189 (growth media) data that predated the last render. reports/growth_conditions_sweep/INDEX.md: sweep prep/progress report (24 OA full text, 21 abstract-only). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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‎docs/browser.html‎

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‎docs/communities/AMD_Acidophile_Heterotroph_Network.html‎

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<span class="metadata-label">Community ID</span>
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<code style="background: #f1f5f9; padding: 0.25rem 0.5rem; border-radius: 4px; font-size: 0.9rem;">CommunityMech:000001</code>
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<p><strong>Biological Processes:</strong></p>
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organic substance catabolic process
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oxidation-reduction process
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‎docs/communities/AMD_Nitrososphaerota_Archaeal.html‎

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