Seg-Model-Creation-GUI/singularity.def at main · DCAN-Labs/Seg-Model-Creation-GUI · GitHub

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BootStrap: docker
From: python:3.9-slim

%post
    # Update package lists and install dependencies
    apt-get update && apt-get install -y \
        python3-pyqt5 \
        qtbase5-dev \
        libxcb-xinerama0 \
        libxcb-icccm4 \
        libxcb-image0 \
        libxcb-keysyms1 \
        libxcb-randr0 \
        libxcb-render-util0 \
        libxcb-shape0 \
        git \
        build-essential \
        python3-dev \
        libopenblas-dev \
        liblapack-dev \
        gfortran \
        && rm -rf /var/lib/apt/lists/*

    # Set working directory
    mkdir -p /app
    cd /app

    # Clone repositories
    git clone https://github.com/DCAN-Labs/Seg-Model-Creation-GUI.git
    git clone https://github.com/DCAN-Labs/SynthSeg.git
    git clone https://github.com/DCAN-Labs/dcan-nn-unet.git

    # Upgrade pip and install Python dependencies
    pip install --upgrade pip setuptools wheel

    # Install NumPy pandas and scipy separately first
    pip install --no-cache-dir numpy==1.21.6
    pip install --no-cache-dir pandas==1.2.5
    pip install --no-cache-dir scipy==1.7.3

    # Install remaining dependencies from requirements.txt
    pip install --no-cache-dir -r /app/Seg-Model-Creation-GUI/requirements.txt --upgrade

%environment
    # Set environment variables for repository paths
    export Synth_Repo=/app/SynthSeg
    export Dcan_Repo=/app/dcan-nn-unet
    export Seg_Model_Repo=/app/Seg-Model-Creation-GUI
    export DISPLAY=:0  # Required for GUI applications

%runscript
    # Command to run the GUI
    python /app/