Hardcoded MSI paths suggested to change in the Python scripts located in the SynthSeg/dcan/paper/ directory, all suggested during the code review on 2022-02-09:
In General
- Replace hardcoded MSI paths with input arguments that the user can change
Change hardcoded MSI paths in specific Python scripts
(Scripts in the SynthSeg/dcan/paper/ directory)
generate_metrics.py
- Currently,
results_dir is hardcoded
- To make this script reproducible on different systems, it should just be a hardcoded default option in an
argparse parser
create_plots.py
- Change the hardcoded relative path to {measure}.png on line 18 to an input arguments (possibly with a hardcoded default)
Hardcoded MSI paths suggested to change in the Python scripts located in the
SynthSeg/dcan/paper/directory, all suggested during the code review on 2022-02-09:In General
Change hardcoded MSI paths in specific Python scripts
(Scripts in the
SynthSeg/dcan/paper/directory)generate_metrics.pyresults_diris hardcodedargparseparsercreate_plots.py