Skip to content

numpy and geopandas minor updates #162

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
mnfienen merged 2 commits into from
Sep 16, 2025
Merged

numpy and geopandas minor updates #162

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
c147bd1
some updates to numpy nb
mnfienen Sep 16, 2025
929c2d5
updated notebook clearing script to be more in-depth. Also, output de…
mnfienen Sep 16, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
45 changes: 19 additions & 26 deletions notebooks/clear_all_notebooks.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
import os
import pathlib as pl
import json
import subprocess

notebook_count = 0
# add the basenames of any notebooks we want to keep the results of
Expand All @@ -18,30 +19,22 @@
'10_modpath_particle_tracking-demo.ipynb'
]

def check_nb_for_output(notebook):
has_output = False
# run autotest on each notebook
with open(notebook) as src:
data = src.read()
data = json.loads(data)
for item in data['cells']:
for k, v in item.items():
if item['cell_type'] == 'code':
if any (item['outputs']):
has_output = True
return has_output


if __name__ == "__main__":

for [path, subdirs, files] in os.walk('.'):
for cf in files:
if cf.lower().endswith('.ipynb') and '.ipynb_checkpoint' not in path:
nb = pl.Path(path) / cf
if ('solutions' not in str(nb) and
nb.name not in skip_notebooks and
check_nb_for_output(nb) is True):
print(f"clearing {nb}")
os.system(f"jupyter nbconvert --clear-output --inplace {nb._str}")
notebook_count += 1
print(notebook_count," notebooks cleared")
nbdir = pl.Path(".")
nbs = nbdir.rglob("*.ipynb")
for nb in nbs:
if ('solutions' not in str(nb) and
nb.name not in skip_notebooks):
print("clearing", nb)
cmd = (
"jupyter",
"nbconvert",
"--ClearOutputPreprocessor.enabled=True",
"--ClearMetadataPreprocessor.enabled=True",
"--ClearMetadataPreprocessor.preserve_nb_metadata_mask={('kernelspec')}",
"--inplace",
nb,
)
proc = subprocess.run(cmd)
assert proc.returncode == 0, f"Error running command: {' '.join(cmd)}"

12 changes: 0 additions & 12 deletions notebooks/part0_python_intro/00_python_basics_review.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1379,18 +1379,6 @@
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.10"
}
},
"nbformat": 4,
Expand Down
16 changes: 1 addition & 15 deletions notebooks/part0_python_intro/00_skills_test_on_basics.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -91,9 +91,7 @@
"cell_type": "code",
"execution_count": null,
"id": "b755a4ce",
"metadata": {
"scrolled": true
},
"metadata": {},
"outputs": [],
"source": [
"# finally split on \"whitespace\" resulting in a list of words\n",
Expand Down Expand Up @@ -287,18 +285,6 @@
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.13"
}
},
"nbformat": 4,
Expand Down
12 changes: 0 additions & 12 deletions notebooks/part0_python_intro/01_functions_scripts.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -694,18 +694,6 @@
"display_name": "pyclass",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.12.11"
}
},
"nbformat": 4,
Expand Down
12 changes: 0 additions & 12 deletions notebooks/part0_python_intro/02_Namespace_objects_modules_packages.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1605,18 +1605,6 @@
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.7"
}
},
"nbformat": 4,
Expand Down
12 changes: 0 additions & 12 deletions notebooks/part0_python_intro/03_useful-std-library-modules.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1252,18 +1252,6 @@
"display_name": "pyclass",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.7"
}
},
"nbformat": 4,
Expand Down
12 changes: 0 additions & 12 deletions notebooks/part0_python_intro/04_files_and_strings.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -843,18 +843,6 @@
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.12.1"
}
},
"nbformat": 4,
Expand Down
29 changes: 13 additions & 16 deletions notebooks/part0_python_intro/05_numpy.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -533,7 +533,7 @@
"print('a[:10]: ', a[:10])\n",
"\n",
"#or print the values from position 20 to the end\n",
"print('a[90:]', a[20:])"
"print('a[20:]', a[20:])"
]
},
{
Expand Down Expand Up @@ -576,7 +576,7 @@
"metadata": {},
"outputs": [],
"source": [
"a[slice(50, None, 5)]"
"a[slice(10, None, 5)]"
]
},
{
Expand Down Expand Up @@ -643,6 +643,15 @@
"#what do you think? Do you think numpy has an identity function?"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"np.eye(10)"
]
},
{
"cell_type": "markdown",
"metadata": {},
Expand Down Expand Up @@ -772,7 +781,7 @@
"metadata": {},
"outputs": [],
"source": [
"# are they the same shape and have all the xam\n",
"# are they the same shape and have all the same values\n",
"np.array_equal(a, b), np.array_equal(b,c)"
]
},
Expand Down Expand Up @@ -1748,21 +1757,9 @@
],
"metadata": {
"kernelspec": {
"display_name": "pyclass",
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.7"
}
},
"nbformat": 4,
Expand Down
12 changes: 0 additions & 12 deletions notebooks/part0_python_intro/06_matplotlib.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1180,18 +1180,6 @@
"display_name": "lisus_p2",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.10"
}
},
"nbformat": 4,
Expand Down
6 changes: 1 addition & 5 deletions notebooks/part0_python_intro/06b_matplotlib_animation.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -94,11 +94,7 @@
"source": []
}
],
"metadata": {
"language_info": {
"name": "python"
}
},
"metadata": {},
"nbformat": 4,
"nbformat_minor": 2
}
6 changes: 1 addition & 5 deletions notebooks/part0_python_intro/07a_Theis-exercise.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -179,11 +179,7 @@
"source": []
}
],
"metadata": {
"language_info": {
"name": "python"
}
},
"metadata": {},
"nbformat": 4,
"nbformat_minor": 4
}
12 changes: 0 additions & 12 deletions notebooks/part0_python_intro/08_pandas.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1527,18 +1527,6 @@
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.7"
}
},
"nbformat": 4,
Expand Down
17 changes: 2 additions & 15 deletions notebooks/part0_python_intro/09_a_Geopandas.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -658,7 +658,6 @@
"metadata": {},
"outputs": [],
"source": [
"\n",
"hoods_boundary = gp.GeoDataFrame(data={'thing':['bounding_box']},geometry=[bbox], crs=hoods.crs)\n",
"hoods_boundary"
]
Expand Down Expand Up @@ -900,7 +899,7 @@
"metadata": {},
"outputs": [],
"source": [
"trees = gp.read_file(datapath / 'Street_Trees.geojson', index_col=0)\n",
"trees = gp.read_file(datapath / 'Street_Trees.geojson')\n",
"trees.plot(column='SPECIES')"
]
},
Expand Down Expand Up @@ -1110,7 +1109,7 @@
},
{
"cell_type": "markdown",
"id": "1952cb07",
"id": "4fa8965f-9b9a-4e6e-9426-a45ce2ee1527",
"metadata": {},
"source": [
"### On your own...\n",
Expand All @@ -1132,18 +1131,6 @@
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.7"
}
},
"nbformat": 4,
Expand Down
12 changes: 0 additions & 12 deletions notebooks/part0_python_intro/09_b_Geopandas_ABQ.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -319,18 +319,6 @@
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.7"
}
},
"nbformat": 4,
Expand Down
Loading
Loading