The Genomics Data Science Core (GDSC) facilitates advanced bioinformatic, computational, and statistical analysis of complex genomics data for the Dartmouth research community.
This repository serves as the public index of our work: reusable pipelines and SOPs developed by the core, and per-project analyses delivered to collaborating labs.
- Core Infrastructure — pipelines, SOPs, and tooling
- Client Projects — collaborations grouped by PI
- Modality Distribution
Reusable assets developed and maintained by the core.
Pipelines (10)
| Project | Modality | Started |
|---|---|---|
| DAC-RNAseq-pipeline | Bulk RNA-Seq | 2019-11-12 |
| GDSC-miRNAseq-analysis-pipeline | miRNA-Seq | 2023-03-20 |
| DAC-WES-pipeline | WES | 2025-03-05 |
| DAC-Barcode-Seq-pipeline | Barcode-Seq | 2025-03-26 |
| DAC-BulkATAC-Seq-pipeline | Epigenetics | 2025-04-04 |
| GDSC-HyperTRIBE-pipeline | HyperTRIBE | 2025-04-25 |
| GDSC-MGX-Pipeline | Metagenomics | 2025-10-02 |
| GDSC-clover-Seq | Clover-Seq | 2025-10-22 |
| Prebuilt_Pixi_Workspaces | Tooling | 2026-03-20 |
| snakemake_DARLIN_mod | Lineage tracing | 2026-04-02 |
SOPs (2)
| Project | Topic | Started |
|---|---|---|
| GDSC-Pixi-SOP | Pixi environment management | 2026-01-19 |
| GEO-submission-file-management | GEO submissions | 2026-03-20 |
Development & Benchmarking (1)
| Project | Focus | Started |
|---|---|---|
| miRNA-pipeline-comparison | Pipeline benchmarking | 2025-11-21 |
Analyses delivered to collaborating Dartmouth labs. Click a PI to expand their projects.
Ashare (1)
| Project | Modality | Started |
|---|---|---|
| 250618_10x_flex_Ashare_scRNA | scRNA-Seq | 2025-06-18 |
Dunlap (1)
| Project | Modality | Started |
|---|---|---|
| 250708-dunlap-atac | Epigenetics | 2025-07-08 |
Fiering (1)
| Project | Modality | Started |
|---|---|---|
| 250916-Fiering-DGE | RNA-Seq | 2025-09-16 |
Godek (1)
| Project | Modality | Started |
|---|---|---|
| 251014_godek_resolveOME | ResolveOME | 2025-10-14 |
Goods (2)
| Project | Modality | Started |
|---|---|---|
| 251006_DNASeq_goods | Metagenomics | 2025-10-06 |
| 251217-Goods-DEGs | RNA-Seq | 2025-12-17 |
Kasper (1)
| Project | Modality | Started |
|---|---|---|
| kasper_250613_10x_multiome | 10x Multiome | 2025-06-13 |
Lacefield (1)
| Project | Modality | Started |
|---|---|---|
| 260323-Lacefield-HyperTRIBE | HyperTRIBE | 2026-03-23 |
Leach (1)
| Project | Modality | Started |
|---|---|---|
| leach-260521-bulkATAC | Epigenetics | 2026-05-21 |
Leib (1)
| Project | Modality | Started |
|---|---|---|
| 20250306-Leib-HSV1-Multiomics | RNA-Seq, Visium | 2025-03-06 |
Malaney (2)
| Project | Modality | Started |
|---|---|---|
| 250922-Malaney-Colon-Cell-line-DEGs | RNA-Seq | 2025-09-22 |
| 251201-Malaney-Lymphoma-Signature | RNA-Seq | 2025-12-01 |
Pioli (1)
| Project | Modality | Started |
|---|---|---|
| 241105_pioli_scRNASeq | scRNA-Seq | 2024-11-05 |
Sundrud (1)
| Project | Modality | Started |
|---|---|---|
| 251123-Sundrud-BarcodeSeq-Dev | Barcode-Seq development | 2025-11-23 |
Turk (1)
| Project | Modality | Started |
|---|---|---|
| 250625_Turk_xenium | 10x Xenium | 2025-06-25 |
Zhang (1)
| Project | Modality | Started |
|---|---|---|
| 251028-Zhang-RNA-seq | RNA-Seq | 2025-10-28 |
View as table
| Modality | Count |
|---|---|
| Pipeline | 10 |
| Bulk-Transcriptomics | 6 |
| Epigenetics | 2 |
| scRNA-Seq | 2 |
| SOP | 2 |
| Workflow Development | 2 |
| 10x Multiome | 1 |
| 10x Visium | 1 |
| 10x Xenium | 1 |
| HyperTRIBE | 1 |
| Metagenomics | 1 |
| ResolveOME | 1 |
View as table
| Modality | Count |
|---|---|
| 1 | 6 |
| Bulk-Transcriptomics | 6 |
| 2 | 4 |
| Epigenetics | 3 |
| HyperTRIBE | 2 |
| Metagenomics | 2 |
| scRNA-Seq | 2 |
| 10 | 1 |
| 10x Multiome | 1 |
| 10x Visium | 1 |
| 10x Xenium | 1 |
| 6 | 1 |
| Barcode-Seq | 1 |
| Barcode-Seq development | 1 |
| Bulk RNA-Seq | 1 |
| Clover-Seq | 1 |
| Count | 1 |
| GEO submissions | 1 |
| Lineage tracing | 1 |
| miRNA-Seq | 1 |
| Pipeline benchmarking | 1 |
| Pixi environment management | 1 |
| ResolveOME | 1 |
| Tooling | 1 |
| WES | 1 |