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- Status: Open.#151 In Daylily-Informatics/daylily-omics-analysis;
- Status: Open.#150 In Daylily-Informatics/daylily-omics-analysis;
- Status: Open.#145 In Daylily-Informatics/daylily-omics-analysis;
- Status: Open.#144 In Daylily-Informatics/daylily-omics-analysis;
QC gap: Unified contamination thresholds across VerifyBamID2, GATK, and site_mix
enhancementNew feature or requestNew feature or requestneeds-triageNeeds prioritization and owner assignmentNeeds prioritization and owner assignmentqcQuality-control workflow and reporting workQuality-control workflow and reporting workStatus: Open.#139 In Daylily-Informatics/daylily-omics-analysis;QC gap: Replace chr20 VerifyBamID2 resource with full-genome SVD marker panel for routine runs
enhancementNew feature or requestNew feature or requestneeds-triageNeeds prioritization and owner assignmentNeeds prioritization and owner assignmentqcQuality-control workflow and reporting workQuality-control workflow and reporting workStatus: Open.#138 In Daylily-Informatics/daylily-omics-analysis;QC gap: Define microbial and viral read contamination screen governance
enhancementNew feature or requestNew feature or requestneeds-triageNeeds prioritization and owner assignmentNeeds prioritization and owner assignmentqcQuality-control workflow and reporting workQuality-control workflow and reporting workStatus: Open.#140 In Daylily-Informatics/daylily-omics-analysis;QC gap: Add long-read platform QC for ONT and PacBio
enhancementNew feature or requestNew feature or requestneeds-triageNeeds prioritization and owner assignmentNeeds prioritization and owner assignmentqcQuality-control workflow and reporting workQuality-control workflow and reporting workStatus: Open.#137 In Daylily-Informatics/daylily-omics-analysis;QC gap: Add cross-tool sample identity adjudication summary
enhancementNew feature or requestNew feature or requestneeds-triageNeeds prioritization and owner assignmentNeeds prioritization and owner assignmentqcQuality-control workflow and reporting workQuality-control workflow and reporting workStatus: Open.#134 In Daylily-Informatics/daylily-omics-analysis;QC gap: Add HTD and pharmacogene QC summaries to MultiQC
enhancementNew feature or requestNew feature or requestneeds-triageNeeds prioritization and owner assignmentNeeds prioritization and owner assignmentqcQuality-control workflow and reporting workQuality-control workflow and reporting workStatus: Open.#135 In Daylily-Informatics/daylily-omics-analysis;QC gap: Merge demux and lane QC context into downstream batch reports
enhancementNew feature or requestNew feature or requestneeds-triageNeeds prioritization and owner assignmentNeeds prioritization and owner assignmentqcQuality-control workflow and reporting workQuality-control workflow and reporting workStatus: Open.#136 In Daylily-Informatics/daylily-omics-analysis;- Status: Open.#4 In Daylily-Informatics/daylily-omics-analysis;