v4-migrator: Populate PERMISSION table in bootstrap phase

[nscuro]

Description

Populates PERMISSION table in bootstrap phase of v4-migrator.

Addressed Issue

Fixes #6217

Additional Details

Docs PR: DependencyTrack/docs#117

Checklist

• I have read and understand the contributing guidelines
• This PR fixes a defect, and I have provided tests to verify that the fix is effective
• This PR implements an enhancement, and I have provided tests to verify that it works as intended
• This PR introduces changes to the database model, and I have updated the migration changelog accordingly
• This PR introduces new or alters existing behavior, and I have updated the documentation accordingly
• This PR is a substantial change (per the ADR criteria), and I have added an ADR under docs/adr/

[owasp-dt-bot]

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[codacy-production]

Up to standards ✅

🟢 Issues 0 issues

Results:
0 new issues

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🟢 Metrics 0 complexity · 4 duplication

Metric	Results
Complexity	0
Duplication	4

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🟢 Coverage ∅ diff coverage · +0.00% coverage variation

Metric	Results
Coverage variation	✅ +0.00% coverage variation (-1.00%)
Diff coverage	✅ ∅ diff coverage (70.00%)

View coverage diff in Codacy

Coverage variation details

	Coverable lines	Covered lines	Coverage
Common ancestor commit (21326bf)	41687	35860	86.02%
Head commit (3562f9d)	41687 (+0)	35862 (+2)	86.03% (+0.00%)

Coverage variation is the difference between the coverage for the head and common ancestor commits of the pull request branch: <coverage of head commit> - <coverage of common ancestor commit>

Diff coverage details

	Coverable lines	Covered lines	Diff coverage
Pull request (#6221)	0	0	∅ (not applicable)

Diff coverage is the percentage of lines that are covered by tests out of the coverable lines that the pull request added or modified: <covered lines added or modified>/<coverable lines added or modified> * 100%

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[Copilot]

Pull request overview

This PR fixes v4-migrator resumability (issue #6217) by ensuring the v5 PERMISSION table is populated during the bootstrap phase, so load can be re-run successfully even when transform is skipped during recovery.

Changes:

• Introduce PermissionCatalog and invoke it from bootstrap to seed the full v5 permission catalog idempotently.
• Remove permission seeding from the PERMISSION table’s transform SQL and update related documentation/comments.
• Add/extend integration tests to cover bootstrapping permission seeding and the documented “re-bootstrap + re-run load” recovery flow.

Reviewed changes

Copilot reviewed 7 out of 7 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
support/v4-migrator/src/main/java/org/dependencytrack/v4migrator/PermissionCatalog.java	Centralizes the v5 PERMISSION seed SQL for use during bootstrap.
support/v4-migrator/src/main/java/org/dependencytrack/v4migrator/cli/BootstrapCommand.java	Seeds the v5 permission catalog immediately after applying Flyway during bootstrap.
support/v4-migrator/src/main/java/org/dependencytrack/v4migrator/TableRegistry.java	Updates PERMISSION transform to rely on an already-seeded v5 permission catalog (builds permission_name_map only).
support/v4-migrator/src/main/java/org/dependencytrack/v4migrator/preflight/Preflight.java	Clarifies that bootstrap-populated seed data (permissions) is allowed when checking target emptiness.
support/v4-migrator/src/test/java/org/dependencytrack/v4migrator/testsupport/V5TargetContainer.java	Aligns test container setup with real bootstrap behavior by using PermissionCatalog.seed.
support/v4-migrator/src/test/java/org/dependencytrack/v4migrator/BootstrapIT.java	Verifies bootstrap both applies Flyway head and seeds PERMISSION, and remains idempotent.
support/v4-migrator/src/test/java/org/dependencytrack/v4migrator/UsersPermissionsIT.java	Adds regression coverage for resuming load after permission reset/reseed (issue #6217).