Fix JunctionManager reset bug and add verification test

Author: DerekGooding

Mythril.Data/JunctionManager.cs

@@ -17,6 +17,7 @@ public class JunctionManager(
     public void Initialize()
     {
         _assignedCadences = _cadences.All.ToNamedDictionary(_ => (Character?)null);
+        Junctions.Clear();
     }
 
     public void AssignCadence(Cadence cadence, Character character, HashSet<string> unlockedAbilities)

Mythril.Tests/ResourceManagerCoreTests.cs

@@ -168,6 +168,29 @@ public void ResourceManager_PayCosts_CadenceUnlock_RemovesItems()
         Assert.AreEqual(0, _resourceManager.Inventory.GetQuantity(unlock.Requirements[0].Item));
     }
 
+    [TestMethod]
+    public void ResourceManager_Initialize_ClearsJunctions()
+    {
+        // Setup a junction
+        var character = _resourceManager!.Characters[0];
+        var stat = ContentHost.GetContent<Stats>().All.First();
+        var magic = _items!.All.First(i => i.Name == "Fire I");
+        
+        // Mock ability unlock
+        _resourceManager.UnlockedAbilities.Add("Recruit:J-Str");
+        var recruit = ContentHost.GetContent<Cadences>().All.First(c => c.Name == "Recruit");
+        _resourceManager.JunctionManager.AssignCadence(recruit, character, _resourceManager.UnlockedAbilities);
+        
+        _resourceManager.JunctionManager.JunctionMagic(character, stat, magic, _resourceManager.UnlockedAbilities);
+        Assert.AreEqual(1, _resourceManager.JunctionManager.Junctions.Count);
+
+        // Initialize
+        _resourceManager.Initialize();
+
+        // Assert
+        Assert.AreEqual(0, _resourceManager.JunctionManager.Junctions.Count, "Junctions should be cleared on initialization.");
+    }
+
     [TestMethod]
     public void Character_Name_ReturnsCorrectValue()
     {

docs/instructions.md

@@ -1,4 +1,4 @@
-# How to Play Mythril 
+# How to Play Mythril
 
 Mythril is a job-based incremental RPG where you manage a party of characters, unlock powerful abilities (Cadences), and tactically manage stats through Junctioning.
 

scripts/data/health_summary.json

@@ -3,7 +3,7 @@
     "failure_count": 1,
     "metrics": {
         "monoliths": 0,
-        "coverage": 91.27,
+        "coverage": 91.28,
         "missing_tests": 0,
         "key_violations": 0,
         "testid_violations": 0,
@@ -14,7 +14,7 @@
     "failures": [
         {
             "category": "docs_stale",
-            "message": "docs/instructions.md is stale (11 source changes since last update)",
+            "message": "docs/instructions.md is stale (13 source changes since last update)",
             "metadata": {}
         }
     ]