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1450 lines (1450 loc) · 37.5 KB
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murfey.instrument_server.api.router:
- path: /health
function: health
path_params: []
methods:
- GET
- path: /token
function: token_handshake
path_params: []
methods:
- POST
- path: /sessions/{session_id}/token
function: token_handshake_for_session
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/check_token
function: check_token
path_params:
- name: session_id
type: int
methods:
- GET
- path: /sessions/{session_id}/multigrid_watcher
function: setup_multigrid_watcher
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/start_multigrid_watcher
function: start_multigrid_watcher
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/multigrid_watcher/{label}
function: stop_multigrid_watcher
path_params:
- name: label
type: str
- name: session_id
type: int
methods:
- DELETE
- path: /sessions/{session_id}/multigrid_controller/status
function: check_multigrid_controller_status
path_params:
- name: session_id
type: int
methods:
- GET
- path: /sessions/{session_id}/multigrid_controller/visit_end_time
function: update_multigrid_controller_visit_end_time
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/stop_rsyncer
function: stop_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/remove_rsyncer
function: remove_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/abandon_controller
function: abandon_controller
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/finalise_rsyncer
function: finalise_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/finalise_session
function: finalise_session
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/restart_rsyncer
function: restart_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/flush_skipped_rsyncer
function: flush_skipped_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /sessions/{session_id}/rsyncer_info
function: get_rsyncer_info
path_params:
- name: session_id
type: int
methods:
- GET
- path: /sessions/{session_id}/analyser_info
function: get_analyser_info
path_params:
- name: session_id
type: int
methods:
- GET
- path: /sessions/{session_id}/processing_parameters
function: register_processing_parameters
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instruments/{instrument_name}/sessions/{session_id}/possible_gain_references
function: get_possible_gain_references
path_params:
- name: instrument_name
type: str
- name: session_id
type: int
methods:
- GET
- path: /instruments/{instrument_name}/sessions/{session_id}/upload_gain_reference
function: upload_gain_reference
path_params:
- name: instrument_name
type: str
- name: session_id
type: int
methods:
- POST
- path: /visits/{visit_name}/sessions/{session_id}/upstream_file_data_request
function: gather_upstream_files
path_params:
- name: visit_name
type: str
- name: session_id
type: int
methods:
- POST
- path: /visits/{visit_name}/sessions/{session_id}/upstream_tiff_data_request
function: gather_upstream_tiffs
path_params:
- name: visit_name
type: str
- name: session_id
type: int
methods:
- POST
murfey.server.api.auth.router:
- path: /auth/token
function: generate_token
path_params: []
methods:
- POST
- path: /auth/sessions/{session_id}/token
function: mint_session_token
path_params:
- name: session_id
type: int
methods:
- GET
- path: /auth/validate_token
function: simple_token_validation
path_params: []
methods:
- GET
murfey.server.api.bootstrap.bootstrap:
- path: /bootstrap/
function: get_bootstrap_instructions
path_params: []
methods:
- GET
- path: /bootstrap/pip.whl
function: get_pip_wheel
path_params: []
methods:
- GET
- path: /bootstrap/murfey.whl
function: get_murfey_wheel
path_params: []
methods:
- GET
murfey.server.api.bootstrap.cygwin:
- path: /cygwin/setup-x86_64.exe
function: get_cygwin_setup
path_params: []
methods:
- GET
- path: /cygwin/{request_path:path}
function: parse_cygwin_request
path_params:
- name: request_path
type: str
methods:
- GET
murfey.server.api.bootstrap.msys2:
- path: /msys2/config/pacman.d.zip
function: get_pacman_mirrors
path_params: []
methods:
- GET
- path: /msys2/repo/distrib/{setup_file}
function: get_msys2_setup
path_params:
- name: setup_file
type: str
methods:
- GET
- path: /msys2/repo/
function: get_msys2_main_index
path_params: []
methods:
- GET
- path: /msys2/repo/{system}/
function: get_msys2_environment_index
path_params:
- name: system
type: str
methods:
- GET
- path: /msys2/repo/{system}/{environment}/
function: get_msys2_package_index
path_params:
- name: system
type: str
- name: environment
type: str
methods:
- GET
- path: /msys2/repo/{system}/{environment}/{package}
function: get_msys2_package_file
path_params:
- name: system
type: str
- name: environment
type: str
- name: package
type: str
methods:
- GET
murfey.server.api.bootstrap.plugins:
- path: /plugins/instruments/{instrument_name}/{package}
function: get_plugin_wheel
path_params:
- name: instrument_name
type: str
- name: package
type: str
methods:
- GET
murfey.server.api.bootstrap.pypi:
- path: /pypi/index/
function: get_pypi_index
path_params: []
methods:
- GET
- path: /pypi/index/{package}/
function: get_pypi_package_downloads_list
path_params:
- name: package
type: str
methods:
- GET
- path: /pypi/packages/{a}/{b}/{c}/{filename}
function: get_pypi_file
path_params:
- name: a
type: str
- name: b
type: str
- name: c
type: str
- name: filename
type: str
methods:
- GET
murfey.server.api.bootstrap.rust:
- path: /rust/cargo/config.toml
function: get_cargo_config
path_params: []
methods:
- GET
- path: /rust/index/
function: get_index_page
path_params: []
methods:
- GET
- path: /rust/index/config.json
function: get_index_config
path_params: []
methods:
- GET
- path: /rust/index/{c1}/{c2}/{package}
function: get_index_package_metadata
path_params:
- name: c1
type: str
- name: c2
type: str
- name: package
type: str
methods:
- GET
- path: /rust/index/{n}/{package}
function: get_index_package_metadata_for_short_package_names
path_params:
- name: n
type: str
- name: package
type: str
methods:
- GET
- path: /rust/crates/{package}/{version}/download
function: get_rust_package_download
path_params:
- name: package
type: str
- name: version
type: str
methods:
- GET
- path: /rust/api/v1/crates
function: get_rust_api_package_index
path_params: []
methods:
- GET
- path: /rust/api/v1/crates/{package}
function: get_rust_api_package_info
path_params:
- name: package
type: str
methods:
- GET
- path: /rust/api/v1/crates/{package}/versions
function: get_rust_api_package_versions
path_params:
- name: package
type: str
methods:
- GET
- path: /rust/api/v1/crates/{package}/{version}/download
function: get_rust_api_package_download
path_params:
- name: package
type: str
- name: version
type: str
methods:
- GET
- path: /rust/crates/{package}/{crate}
function: get_rust_package_crate
path_params:
- name: package
type: str
- name: crate
type: str
methods:
- GET
murfey.server.api.bootstrap.version:
- path: /version/
function: get_version
path_params: []
methods:
- GET
murfey.server.api.clem.router:
- path: /workflow/clem/sessions/{session_id}/clem/lif_files
function: register_lif_file
path_params:
- name: session_id
type: int
methods:
- POST
- path: /workflow/clem/sessions/{session_id}/clem/tiff_files
function: register_tiff_file
path_params:
- name: session_id
type: int
methods:
- POST
- path: /workflow/clem/sessions/{session_id}/clem/metadata_files
function: register_clem_metadata
path_params:
- name: session_id
type: int
methods:
- POST
- path: /workflow/clem/sessions/{session_id}/clem/image_series
function: register_image_series
path_params:
- name: session_id
type: int
methods:
- POST
- path: /workflow/clem/sessions/{session_id}/clem/image_stacks
function: register_image_stack
path_params:
- name: session_id
type: int
methods:
- POST
- path: /workflow/clem/sessions/{session_id}/clem/preprocessing/process_raw_lifs
function: process_raw_lifs
path_params:
- name: session_id
type: int
methods:
- POST
- path: /workflow/clem/sessions/{session_id}/clem/preprocessing/process_raw_tiffs
function: process_raw_tiffs
path_params:
- name: session_id
type: int
methods:
- POST
- path: /workflow/clem/sessions/{session_id}/clem/processing/align_and_merge_stacks
function: align_and_merge_stacks
path_params:
- name: session_id
type: int
methods:
- POST
murfey.server.api.display.router:
- path: /display/instruments/{instrument_name}/instrument_name
function: get_instrument_display_name
path_params:
- name: instrument_name
type: str
methods:
- GET
- path: /display/instruments/{instrument_name}/image/
function: get_mic_image
path_params:
- name: instrument_name
type: str
methods:
- GET
- path: /display/sessions/{session_id}/data_collection_groups/{dcgid}/grid_squares/{grid_square_name}/image
function: get_grid_square_img
path_params:
- name: session_id
type: int
- name: dcgid
type: int
- name: grid_square_name
type: int
methods:
- GET
- path: /display/sessions/{session_id}/data_collection_groups/{dcgid}/grid_squares/{grid_square_name}/foil_holes/{foil_hole_name}/image
function: get_foil_hole_img
path_params:
- name: session_id
type: int
- name: dcgid
type: int
- name: grid_square_name
type: int
- name: foil_hole_name
type: int
methods:
- GET
murfey.server.api.file_io_frontend.router:
- path: /file_io/frontend/sessions/{session_id}/process_gain
function: process_gain
path_params:
- name: session_id
type: int
methods:
- POST
- path: /file_io/frontend/sessions/{session_id}/symlink
function: create_symlink
path_params:
- name: session_id
type: int
methods:
- POST
murfey.server.api.file_io_instrument.router:
- path: /file_io/instrument/visits/{visit_name}/sessions/{session_id}/suggested_path
function: suggest_path
path_params:
- name: visit_name
type: str
- name: session_id
type: int
methods:
- POST
- path: /file_io/instrument/sessions/{session_id}/make_rsyncer_destination
function: make_rsyncer_destination
path_params:
- name: session_id
type: int
methods:
- POST
- path: /file_io/instrument/sessions/{session_id}/process_gain
function: process_gain
path_params:
- name: session_id
type: int
methods:
- POST
- path: /file_io/instrument/visits/{visit_name}/sessions/{session_id}/eer_fractionation_file
function: write_eer_fractionation_file
path_params:
- name: visit_name
type: str
- name: session_id
type: int
methods:
- POST
murfey.server.api.hub.router:
- path: /instruments
function: get_instrument_info
path_params: []
methods:
- GET
- path: /instrument/{instrument_name}/image
function: get_instrument_image
path_params:
- name: instrument_name
type: str
methods:
- GET
murfey.server.api.instrument.router:
- path: /instrument_server/instruments/{instrument_name}/sessions/{session_id}/activate_instrument_server
function: activate_instrument_server_for_session
path_params:
- name: session_id
type: int
- name: instrument_name
type: str
methods:
- POST
- path: /instrument_server/instruments/{instrument_name}/sessions/{session_id}/active
function: check_if_session_is_active
path_params:
- name: session_id
type: int
- name: instrument_name
type: str
methods:
- GET
- path: /instrument_server/sessions/{session_id}/multigrid_controller/status
function: check_multigrid_controller_status
path_params:
- name: session_id
type: int
methods:
- GET
- path: /instrument_server/sessions/{session_id}/multigrid_watcher
function: setup_multigrid_watcher
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/start_multigrid_watcher
function: start_multigrid_watcher
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/multigrid_controller/visit_end_time
function: update_visit_end_time
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/provided_processing_parameters
function: pass_proc_params_to_instrument_server
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/instruments/{instrument_name}/instrument_server
function: check_instrument_server
path_params:
- name: instrument_name
type: str
methods:
- GET
- path: /instrument_server/instruments/{instrument_name}/sessions/{session_id}/possible_gain_references
function: get_possible_gain_references
path_params:
- name: instrument_name
type: str
- name: session_id
type: int
methods:
- GET
- path: /instrument_server/sessions/{session_id}/upload_gain_reference
function: request_gain_reference_upload
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/visits/{visit_name}/sessions/{session_id}/upstream_tiff_data_request
function: request_upstream_tiff_data_download
path_params:
- name: visit_name
type: str
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/visits/{visit_name}/sessions/{session_id}/upstream_file_data_request
function: request_upstream_file_data_download
path_params:
- name: visit_name
type: str
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/stop_rsyncer
function: stop_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/finalise_rsyncer
function: finalise_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/finalise_session
function: finalise_session
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/abandon_session
function: abandon_session
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/remove_rsyncer
function: remove_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/restart_rsyncer
function: restart_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/sessions/{session_id}/flush_skipped_rsyncer
function: flush_skipped_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /instrument_server/instruments/{instrument_name}/sessions/{session_id}/rsyncer_info
function: get_rsyncer_info
path_params:
- name: instrument_name
type: str
- name: session_id
type: int
methods:
- GET
murfey.server.api.logging.router:
- path: /logging/logs
function: forward_logs
path_params: []
methods:
- POST
murfey.server.api.mag_table.router:
- path: /mag_table/mag_table/
function: get_mag_table
path_params: []
methods:
- GET
- path: /mag_table/mag_table/
function: add_to_mag_table
path_params: []
methods:
- POST
- path: /mag_table/mag_table/{mag}
function: remove_mag_table_row
path_params:
- name: mag
type: int
methods:
- DELETE
murfey.server.api.processing_parameters.router:
- path: /session_parameters/sessions/{session_id}/session_processing_parameters
function: get_session_processing_parameters
path_params:
- name: session_id
type: int
methods:
- GET
- path: /session_parameters/sessions/{session_id}/session_processing_parameters
function: set_session_processing_parameters
path_params:
- name: session_id
type: int
methods:
- POST
murfey.server.api.prometheus.router:
- path: /prometheus/visits/{visit_name}/increment_rsync_file_count
function: increment_rsync_file_count
path_params:
- name: visit_name
type: str
methods:
- POST
- path: /prometheus/visits/{visit_name}/increment_rsync_transferred_files
function: increment_rsync_transferred_files
path_params:
- name: visit_name
type: str
methods:
- POST
- path: /prometheus/visits/{visit_name}/increment_rsync_transferred_files_prometheus
function: increment_rsync_transferred_files_prometheus
path_params:
- name: visit_name
type: str
methods:
- POST
- path: /prometheus/visits/{visit_name}/increment_rsync_skipped_files_prometheus
function: increment_rsync_skipped_files_prometheus
path_params:
- name: visit_name
type: str
methods:
- POST
- path: /prometheus/visits/{visit_name}/monitoring/{on}
function: change_monitoring_status
path_params:
- name: visit_name
type: str
- name: "on"
type: int
methods:
- POST
- path: /prometheus/metrics/{metric_name}
function: inspect_prometheus_metrics
path_params:
- name: metric_name
type: str
methods:
- GET
murfey.server.api.session_control.correlative_router:
- path: /session_control/correlative/sessions/{session_id}/upstream_visits
function: find_upstream_visits
path_params:
- name: session_id
type: int
methods:
- GET
- path: /session_control/correlative/visits/{visit_name}/sessions/{session_id}/upstream_file_paths
function: gather_upstream_files
path_params:
- name: visit_name
type: str
- name: session_id
type: int
methods:
- GET
- path: /session_control/correlative/visits/{visit_name}/sessions/{session_id}/upstream_file/{upstream_file_path:path}
function: get_upstream_file
path_params:
- name: visit_name
type: str
- name: upstream_file_path
type: str
- name: session_id
type: int
methods:
- GET
- path: /session_control/correlative/visits/{visit_name}/sessions/{session_id}/upstream_tiff_paths
function: gather_upstream_tiffs
path_params:
- name: visit_name
type: str
- name: session_id
type: int
methods:
- GET
- path: /session_control/correlative/visits/{visit_name}/sessions/{session_id}/upstream_tiff/{tiff_path:path}
function: get_tiff_file
path_params:
- name: visit_name
type: str
- name: session_id
type: int
- name: tiff_path
type: str
methods:
- GET
murfey.server.api.session_control.router:
- path: /session_control/time
function: get_current_timestamp
path_params: []
methods:
- GET
- path: /session_control/instruments/{instrument_name}/machine
function: machine_info_by_instrument
path_params:
- name: instrument_name
type: str
methods:
- GET
- path: /session_control/new_client_id/
function: new_client_id
path_params: []
methods:
- GET
- path: /session_control/instruments/{instrument_name}/visits_raw
function: get_current_visits
path_params:
- name: instrument_name
type: str
methods:
- GET
- path: /session_control/instruments/{instrument_name}/clients/{client_id}/session
function: link_client_to_session
path_params:
- name: instrument_name
type: str
- name: client_id
type: int
methods:
- POST
- path: /session_control/visits/{visit_name}
function: register_client_to_visit
path_params:
- name: visit_name
type: str
methods:
- POST
- path: /session_control/sessions
function: get_sessions
path_params: []
methods:
- GET
- path: /session_control/sessions/{session_id}
function: remove_session
path_params:
- name: session_id
type: int
methods:
- DELETE
- path: /session_control/sessions/{session_id}/data_collection_groups
function: get_dc_groups
path_params:
- name: session_id
type: int
methods:
- GET
- path: /session_control/sessions/{session_id}/successful_processing
function: register_processing_success_in_ispyb
path_params:
- name: session_id
type: int
methods:
- POST
- path: /session_control/num_movies
function: count_number_of_movies
path_params: []
methods:
- GET
- path: /session_control/instruments/{instrument_name}/failed_client_post
function: failed_client_post
path_params:
- name: instrument_name
type: str
methods:
- POST
- path: /session_control/sessions/{session_id}/rsyncer
function: register_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /session_control/sessions/{session_id}/rsyncers
function: get_rsyncers_for_session
path_params:
- name: session_id
type: int
methods:
- GET
- path: /session_control/sessions/{session_id}/rsyncer_stopped
function: register_stopped_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /session_control/sessions/{session_id}/rsyncer_started
function: register_restarted_rsyncer
path_params:
- name: session_id
type: int
methods:
- POST
- path: /session_control/sessions/{session_id}/rsyncer
function: delete_rsyncer
path_params:
- name: session_id
type: int
methods:
- DELETE
murfey.server.api.session_control.spa_router:
- path: /session_control/spa/sessions/{session_id}/grid_squares
function: get_grid_squares
path_params:
- name: session_id
type: int
methods:
- GET
- path: /session_control/spa/sessions/{session_id}/data_collection_groups/{dcgid}/grid_squares
function: get_grid_squares_from_dcg
path_params:
- name: dcgid
type: int
- name: session_id
type: int
methods:
- GET
- path: /session_control/spa/sessions/{session_id}/data_collection_groups/{dcgid}/grid_squares/{gsid}/foil_holes
function: get_foil_holes_from_grid_square
path_params:
- name: dcgid
type: int
- name: gsid
type: int
- name: session_id
type: int
methods:
- GET
- path: /session_control/spa/sessions/{session_id}/foil_hole/{fh_name}
function: get_foil_hole
path_params:
- name: fh_name
type: int
- name: session_id
type: int
methods:
- GET
- path: /session_control/spa/sessions/{session_id}/register_atlas
function: register_atlas
path_params:
- name: session_id
type: int
methods:
- POST
- path: /session_control/spa/sessions/{session_id}/make_atlas_jpg
function: make_atlas_jpg
path_params:
- name: session_id
type: int
methods:
- POST
- path: /session_control/spa/sessions/{session_id}/grid_square/{gsid}
function: register_grid_square
path_params:
- name: gsid
type: int
- name: session_id
type: int
methods:
- POST