Don't close database until search map hooks are called (#831)

stephen-riggs · web-flow · commit 12ab53a6d32e · 2026-06-17T15:54:08.000+01:00
diff --git a/src/murfey/workflows/tomo/tomo_metadata.py b/src/murfey/workflows/tomo/tomo_metadata.py
@@ -243,8 +243,6 @@ def register_search_map_in_database(
         )
     murfey_db.add(search_map)
     murfey_db.commit()
-    if close_db:
-        murfey_db.close()
 
     if search_map_hooks := entry_points(group="murfey.hooks", name="search_map"):
         try:
@@ -257,6 +255,8 @@ def register_search_map_in_database(
                 )
         except Exception as e:
             logger.error(f"Call to search map hook failed with {e}", exc_info=True)
+    if close_db:
+        murfey_db.close()
 
 
 def register_batch_position_in_database(

Original file line number	Diff line number	Diff line change
`@@ -243,8 +243,6 @@ def register_search_map_in_database(`
`243`	`243`	`)`
`244`	`244`	`murfey_db.add(search_map)`
`245`	`245`	`murfey_db.commit()`
`246`		`- if close_db:`
`247`		`- murfey_db.close()`
`248`	`246`
`249`	`247`	`if search_map_hooks := entry_points(group="murfey.hooks", name="search_map"):`
`250`	`248`	`try:`
`@@ -257,6 +255,8 @@ def register_search_map_in_database(`
`257`	`255`	`)`
`258`	`256`	`except Exception as e:`
`259`	`257`	`logger.error(f"Call to search map hook failed with {e}", exc_info=True)`
	`258`	`+ if close_db:`
	`259`	`+ murfey_db.close()`
`260`	`260`
`261`	`261`
`262`	`262`	`def register_batch_position_in_database(`