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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -89,18 +89,9 @@ def ensure_dcg_exists(
8989 if not windows_path :
9090 logger .warning ("No atlas metadata path found" )
9191 return None
92- if environment .visit in windows_path .split ("\\ " ):
93- # Case of atlas in the correct location
94- visit_index = windows_path .split ("\\ " ).index (environment .visit )
95- partial_path = "/" .join (windows_path .split ("\\ " )[visit_index + 1 :])
96- logger .info (
97- f"Partial Linux path successfully constructed from Windows path: { partial_path } "
98- )
99- else :
100- # Atlas not in visit, so come up with where it should have been
101- # Assumes /structure/to/Supervisor/Sample/Atlas/Atlas.dm
102- partial_path = "/" .join (windows_path .split ("\\ " )[- 4 :])
103- logger .info (f"Partial Linux path estimated: { partial_path } " )
92+ visit_index = windows_path .split ("\\ " ).index (environment .visit )
93+ partial_path = "/" .join (windows_path .split ("\\ " )[visit_index + 1 :])
94+ logger .info ("Partial Linux path successfully constructed from Windows path" )
10495
10596 logger .info (
10697 f"Looking for atlas XML file in metadata directory { str ((source_visit_dir / partial_path ).parent )} "
Original file line number Diff line number Diff line change @@ -566,15 +566,12 @@ def _start_dc(self, metadata_json):
566566 + "/" .join (source .parts [- 2 :])
567567 )
568568 metadata_source = Path (metadata_source_as_str .replace ("//" , "/" ))
569- try :
570- ensure_dcg_exists (
571- collection_type = "spa" ,
572- metadata_source = metadata_source ,
573- environment = self ._environment ,
574- token = self .token ,
575- )
576- except Exception as e :
577- log .error (f"Failed to register data collection group: { e } " )
569+ ensure_dcg_exists (
570+ collection_type = "spa" ,
571+ metadata_source = metadata_source ,
572+ environment = self ._environment ,
573+ token = self .token ,
574+ )
578575 data = {
579576 "voltage" : metadata_json ["voltage" ],
580577 "pixel_size_on_image" : metadata_json ["pixel_size_on_image" ],
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