add storage folder to atlas so that montages can be made in the correct location later

Author: d-j-hatton

src/murfey/client/analyser.py

@@ -378,7 +378,7 @@ def _analyse(self):
                 self.post_transfer(transferred_file)
             else:
                 dc_metadata = {}
-                if (
+                if not self._serialem and (
                     self._force_mdoc_metadata
                     and transferred_file.suffix == ".mdoc"
                     or mdoc_for_reading

src/murfey/client/contexts/atlas.py

@@ -59,6 +59,7 @@ def post_transfer_serialem(
                     data={
                         "name": transferred_file.stem,
                         "acquisition_uuid": environment.acquisition_uuid,
+                        "storage_folder": str(source),
                     },
                 )
 

src/murfey/server/api/session_control.py

@@ -360,6 +360,7 @@ def get_foil_hole(
 class AtlasRegistration(BaseModel):
     name: str
     acquisition_uuid: str
+    storage_folder: str = ""
     register_grid: bool = False
 
 
@@ -390,7 +391,7 @@ def register_atlas(
                 atlas_data = AtlasData(
                     id=atlas_registration_data.name,
                     acquisition_date=datetime.now(),
-                    storage_folder="",
+                    storage_folder=atlas_registration_data.storage_folder,
                     name=atlas_registration_data.name,
                     tiles=[],
                     gridsquare_positions=None,