Add sxt router and rename recipe (#795)

Author: stephen-riggs

src/murfey/client/contexts/sxt.py

@@ -85,7 +85,7 @@ def register_sxt_data_collection(
             )
 
             recipes_to_assign_pjids = [
-                "sxt-tomo-align",
+                "sxt-aretomo",
             ]
             for recipe in recipes_to_assign_pjids:
                 capture_post(

src/murfey/server/main.py

@@ -96,6 +96,7 @@ class Settings(BaseSettings):
 app.include_router(murfey.server.api.workflow.router)
 app.include_router(murfey.server.api.workflow.correlative_router)
 app.include_router(murfey.server.api.workflow.spa_router)
+app.include_router(murfey.server.api.workflow.sxt_router)
 app.include_router(murfey.server.api.workflow.tomo_router)
 app.include_router(murfey.server.api.workflow_clem.router)
 app.include_router(murfey.server.api.workflow_fib.router)

src/murfey/workflows/sxt/process_sxt_tilt_series.py

@@ -64,7 +64,7 @@ def process_sxt_tilt_series_workflow(
         .where(DataCollection.dcg_id == DataCollectionGroup.id)
         .where(ProcessingJob.dc_id == DataCollection.id)
         .where(AutoProcProgram.pj_id == ProcessingJob.id)
-        .where(ProcessingJob.recipe == "sxt-tomo-align")
+        .where(ProcessingJob.recipe == "sxt-aretomo")
     ).one()
     instrument_name = (
         murfey_db.exec(select(Session).where(Session.id == session_id))
@@ -93,7 +93,7 @@ def process_sxt_tilt_series_workflow(
     )
     stack_file.parent.mkdir(parents=True, exist_ok=True)
     zocalo_message = {
-        "recipes": ["sxt-tomo-align"],
+        "recipes": ["sxt-aretomo"],
         "parameters": {
             "txrm_file": tilt_series_info.txrm,
             "dcid": collected_ids[1].id,

tests/client/contexts/test_sxt.py

@@ -107,7 +107,7 @@ def test_sxt_context_txrm(
         json={
             "tag": "example",
             "source": str(tmp_path),
-            "recipe": "sxt-tomo-align",
+            "recipe": "sxt-aretomo",
             "experiment_type": "sxt",
         },
         headers={"Authorization": "Bearer "},

tests/workflows/sxt/test_process_sxt_tilt_series.py

@@ -38,7 +38,7 @@ def set_up_db(murfey_db_session: Session):
         ProcessingJob,
         lookup_kwargs={
             "id": 1,
-            "recipe": "sxt-tomo-align",
+            "recipe": "sxt-aretomo",
             "dc_id": dc_entry.id,
         },
     )
@@ -92,7 +92,7 @@ def test_process_new_sxt_tilt_series(
                 "manual_tilt_offset": -1,
                 "node_creator_queue": "node_creator",
             },
-            "recipes": ["sxt-tomo-align"],
+            "recipes": ["sxt-aretomo"],
         },
         new_connection=True,
     )