aliases not being applied on table creation

Author: d-j-hatton

src/murfey/util/db.py

@@ -415,7 +415,12 @@ class Tilt(SQLModel, table=True):  # type: ignore
 
 
 class DataCollectionGroup(SQLModel, table=True):  # type: ignore
-    id: int = Field(primary_key=True, unique=True, alias="dataCollectionGroupId")
+    id: int = Field(
+        primary_key=True,
+        unique=True,
+        alias="dataCollectionGroupId",
+        sa_column_kwargs={"name": "dataCollectionGroupId"},
+    )
     session_id: int = Field(foreign_key="session.id", primary_key=True)
     tag: str = Field(primary_key=True)
     atlas_id: Optional[int] = None
@@ -479,10 +484,17 @@ class NotificationValue(SQLModel, table=True):  # type: ignore
 
 
 class DataCollection(SQLModel, table=True):  # type: ignore
-    id: int = Field(primary_key=True, unique=True, alias="dataCollectionId")
+    id: int = Field(
+        primary_key=True,
+        unique=True,
+        alias="dataCollectionId",
+        sa_column_kwargs={"name": "dataCollectionId"},
+    )
     tag: str = Field(primary_key=True)
     dcg_id: int = Field(
-        foreign_key="datacollectiongroup.id", alias="dataCollectionGroupId"
+        foreign_key="datacollectiongroup.id",
+        alias="dataCollectionGroupId",
+        sa_column_kwargs={"name": "dataCollectionGroupId"},
     )
     data_collection_group: Optional[DataCollectionGroup] = Relationship(
         back_populates="data_collections"
@@ -502,9 +514,18 @@ class DataCollection(SQLModel, table=True):  # type: ignore
 
 
 class ProcessingJob(SQLModel, table=True):  # type: ignore
-    id: int = Field(primary_key=True, unique=True, alias="processingJobId")
+    id: int = Field(
+        primary_key=True,
+        unique=True,
+        alias="processingJobId",
+        sa_column_kwargs={"name": "processingJobId"},
+    )
     recipe: str = Field(primary_key=True)
-    dc_id: int = Field(foreign_key="datacollection.id", alias="dataCollectionId")
+    dc_id: int = Field(
+        foreign_key="datacollection.id",
+        alias="dataCollectionId",
+        sa_column_kwargs={"name": "dataCollectionId"},
+    )
     data_collection: Optional[DataCollection] = Relationship(
         back_populates="processing_jobs"
     )
@@ -592,8 +613,17 @@ class TomographyProcessingParameters(SQLModel, table=True):  # type: ignore
 
 
 class AutoProcProgram(SQLModel, table=True):  # type: ignore
-    id: int = Field(primary_key=True, unique=True, alias="autoProcProgramId")
-    pj_id: int = Field(foreign_key="processingjob.id", alias="processingJobId")
+    id: int = Field(
+        primary_key=True,
+        unique=True,
+        alias="autoProcProgramId",
+        sa_column_kwargs={"name": "autoProcProgramId"},
+    )
+    pj_id: int = Field(
+        foreign_key="processingjob.id",
+        alias="processingJobId",
+        sa_column_kwargs={"name": "processingJobId"},
+    )
     processing_job: Optional[ProcessingJob] = Relationship(
         back_populates="auto_proc_programs"
     )
@@ -763,10 +793,15 @@ class SearchMap(SQLModel, table=True):  # type: ignore
 
 class Movie(SQLModel, table=True):  # type: ignore
     murfey_id: int = Field(
-        primary_key=True, foreign_key="murfeyledger.id", alias="movieId"
+        primary_key=True,
+        foreign_key="murfeyledger.id",
+        alias="movieId",
+        sa_column_kwargs={"name": "movieId"},
     )
     data_collection_id: Optional[int] = Field(
-        foreign_key="datacollection.id", alias="dataCollectionId"
+        foreign_key="datacollection.id",
+        alias="dataCollectionId",
+        sa_column_kwargs={"name": "dataCollectionId"},
     )
     foil_hole_id: int = Field(foreign_key="foilhole.id", nullable=True, default=None)
     path: str