Allow multiple reconstruction recipes for sxt#830
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Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## main #830 +/- ##
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+ Coverage 53.10% 53.40% +0.29%
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Files 99 100 +1
Lines 10817 10938 +121
Branches 1432 1445 +13
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+ Hits 5744 5841 +97
- Misses 4769 4788 +19
- Partials 304 309 +5 🚀 New features to boost your workflow:
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stephen-riggs
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For SXT imod batchruntomo is desired as an alternative to aretomo. This makes a service which can run batchruntomo with a limited subset of options. In particular, patch or bead and wbp or sirt, with two recipes to support this. Some of the aretomo parts of this repo are renamed. Tested through the dev setup and Imod runs successfully, but currently only with version 4.9.2 To do in future PR: * Upgrade imod version * Aln file for tilt series alignment image * xy shift plot * alignment quality value Links to DiamondLightSource/python-murfey#830 and #273
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This moves the SXT processing into a rabbitmq message, and adds support for more recipes.
Recipes in the machine config are detected and all of these are used to send processing if the collection type is SXT. This will allow for using imod and aretomo.
Links to DiamondLightSource/cryoem-services#258