angieye->eyeflow

MaxBA1602 · MaxBA1602 · commit 6a6ca0ffae35 · 2026-04-21T11:37:03.000+02:00
diff --git a/EyeFlow.ico b/EyeFlow.ico
diff --git a/EyeFlow.spec b/EyeFlow.spec
@@ -8,8 +8,8 @@ datas += collect_data_files('pipelines')
 datas += collect_data_files('postprocess')
 datas += collect_data_files('sv_ttk')
 datas += collect_data_files('tkinterdnd2')
-datas += [('Angioeye_logo.png', '.')]
-datas += [('AngioEye.ico', '.')]
+datas += [('EyeFlow_logo.png', '.')]
+datas += [('EyeFlow.ico', '.')]
 datas += [('default_settings.json', '.')]
 datas += [('pyproject.toml', '.')]
 hiddenimports += collect_submodules('pipelines')
@@ -19,7 +19,7 @@ hiddenimports += ['matplotlib.backends.backend_ps']
 
 
 a = Analysis(
-    ['src\\angio_eye.py'],
+    ['src\\eye_flow.py'],
     pathex=['src'],
     binaries=[],
     datas=datas,
@@ -39,7 +39,7 @@ exe = EXE(
     a.binaries,
     a.datas,
     [],
-    name='AngioEye',
+    name='EyeFlow',
     debug=False,
     bootloader_ignore_signals=False,
     strip=False,
@@ -52,5 +52,5 @@ exe = EXE(
     target_arch=None,
     codesign_identity=None,
     entitlements_file=None,
-    icon='AngioEye.ico',
+    icon='EyeFlow.ico',
 )
diff --git a/EyeFlow_logo.png b/EyeFlow_logo.png
diff --git a/README.md b/README.md
@@ -1,6 +1,6 @@
-# AngioEye
+# EyeFlow
 
-AngioEye is the cohort-analysis engine for retinal Doppler holography. It browses EyeFlow .h5 outputs, reads per-segment metrics, applies QC, compares models, and aggregates results at eye/cohort level (including artery–vein summaries) to help design biomarkers. It exports clean CSV reports for stats, figures, and clinical models.
+EyeFlow is the cohort-analysis engine for retinal Doppler holography. It browses EyeFlow .h5 outputs, reads per-segment metrics, applies QC, compares models, and aggregates results at eye/cohort level (including artery–vein summaries) to help design biomarkers. It exports clean CSV reports for stats, figures, and clinical models.
 
 ---
 
@@ -83,23 +83,23 @@ Use the Postprocess Library tab the same way for postprocess steps.
 
 ```sh
 # Via the entry point
-angioeye
+eyeflow
 
 # Or via the script
-python src/angio_eye.py
+python src/eye_flow.py
 ```
 
-When you run `angioeye` from inside the repository checkout, the launcher prefers the local `src/` tree so newly added or edited pipelines are picked up without needing a full reinstall.
+When you run `eyeflow` from inside the repository checkout, the launcher prefers the local `src/` tree so newly added or edited pipelines are picked up without needing a full reinstall.
 
-Installed builds expose editable `pipelines/` and `postprocess/` folders next to `AngioEye.exe`; use the Library tabs' Open folder and Reload buttons to edit and refresh them.
+Installed builds expose editable `pipelines/` and `postprocess/` folders next to `EyeFlow.exe`; use the Library tabs' Open folder and Reload buttons to edit and refresh them.
 
 ### CLI
 
 The CLI is designed for batch processing in headless environments or clusters.
 
 ```sh
 # Via the entry point
-angioeye-cli
+eyeflow-cli
 
 # Or via the script
 python src/cli.py
@@ -109,7 +109,7 @@ python src/cli.py
 
 ## Pipeline System
 
-Pipelines are the heart of AngioEye. To add a new analysis, create a file in `src/pipelines/` with a class inheriting from `ProcessPipeline`.
+Pipelines are the heart of EyeFlow. To add a new analysis, create a file in `src/pipelines/` with a class inheriting from `ProcessPipeline`.
 
 To register it to the app, add the decorator `@register_pipeline`. You can define any needed imports inside, as well as some more info.
 
diff --git a/installer/EyeFlow.iss b/installer/EyeFlow.iss
@@ -1,4 +1,4 @@
-#define MyAppName "AngioEye"
+#define MyAppName "EyeFlow"
 
 #ifndef AppVersion
   #define AppVersion "0.1.0"
@@ -27,14 +27,14 @@ LicenseFile={#PayloadDir}\LICENSE
 ArchitecturesAllowed=x64compatible
 ArchitecturesInstallIn64BitMode=x64compatible
 OutputDir={#OutputDir}
-OutputBaseFilename=AngioEye-setup-{#AppVersion}
+OutputBaseFilename=EyeFlow-setup-{#AppVersion}
 Compression=lzma
 SolidCompression=yes
 WizardStyle=modern
 PrivilegesRequired=admin
-SetupIconFile={#PayloadDir}\AngioEye.ico
+SetupIconFile={#PayloadDir}\EyeFlow.ico
 UninstallDisplayName={#MyAppVersionedName}
-UninstallDisplayIcon={app}\AngioEye.exe
+UninstallDisplayIcon={app}\EyeFlow.exe
 UsePreviousAppDir=no
 UsePreviousGroup=no
 UsePreviousTasks=no
@@ -46,8 +46,8 @@ Name: "desktopicon"; Description: "Create a desktop shortcut"; GroupDescription:
 Source: "{#PayloadDir}\*"; DestDir: "{app}"; Flags: ignoreversion recursesubdirs createallsubdirs
 
 [Icons]
-Name: "{autoprograms}\{#MyAppVersionedName}"; Filename: "{app}\AngioEye.exe"
-Name: "{autodesktop}\{#MyAppVersionedName}"; Filename: "{app}\AngioEye.exe"; Tasks: desktopicon
+Name: "{autoprograms}\{#MyAppVersionedName}"; Filename: "{app}\EyeFlow.exe"
+Name: "{autodesktop}\{#MyAppVersionedName}"; Filename: "{app}\EyeFlow.exe"; Tasks: desktopicon
 
 [Run]
-Filename: "{app}\AngioEye.exe"; Description: "Launch {#MyAppVersionedName}"; Flags: nowait postinstall skipifsilent
+Filename: "{app}\EyeFlow.exe"; Description: "Launch {#MyAppVersionedName}"; Flags: nowait postinstall skipifsilent
diff --git a/pyproject.toml b/pyproject.toml
@@ -3,8 +3,8 @@ requires = ["setuptools >= 77.0.3"]
 build-backend = "setuptools.build_meta"
 
 [project]
-name = "AngioEye"
-version = "1.10.0"
+name = "EyeFlow"
+version = "0.1.0"
 description = "Cohort-analysis engine for retinal Doppler holography"
 readme = "README.md"
 requires-python = ">=3.10"
@@ -25,17 +25,17 @@ dev = ["ruff", "pre-commit", "pyinstaller"]
 # =============== [ SCRIPTS ] ===============
 
 [project.scripts]
-# This allows users to simply type 'angioeye' in their terminal
-angioeye = "launcher:main"
-angioeye-cli = "launcher:cli_main"
+# This allows users to simply type 'eyeflow' in their terminal
+eyeflow = "launcher:main"
+eyeflow-cli = "launcher:cli_main"
 build-installer = "scripts.build_installer:main"
 
 lint-tool = "scripts.ruff_linter:main"
 
 [tool.setuptools]
 package-dir = { "" = "src" }
 py-modules = [
-    "angio_eye",
+    "eye_flow",
     "cli",
     "app_settings",
     "dependency_utils",
diff --git a/src/app_settings.py b/src/app_settings.py
@@ -9,7 +9,7 @@
 from pathlib import Path
 from typing import Any
 
-APP_NAME = "AngioEye"
+APP_NAME = "EyeFlow"
 SETTINGS_FILENAME = "settings.json"
 DEFAULT_SETTINGS_FILENAME = "default_settings.json"
 LAST_BATCH_LOG_FILENAME = "last_batch_log.txt"
@@ -31,7 +31,7 @@ def _read_version_from_pyproject(pyproject_path: Path) -> str | None:
 
 
 def app_version() -> str | None:
-    env_version = os.getenv("ANGIOEYE_VERSION", "").strip()
+    env_version = os.getenv("EYEFLOW_VERSION", "").strip()
     if env_version:
         return env_version
 
@@ -83,7 +83,7 @@ def _resource_roots() -> list[Path]:
 
 
 def default_settings_template_path() -> Path | None:
-    env_path = os.getenv("ANGIOEYE_DEFAULT_SETTINGS")
+    env_path = os.getenv("EYEFLOW_DEFAULT_SETTINGS")
     if env_path:
         candidate = Path(env_path).expanduser()
         if candidate.is_file():
diff --git a/src/cli.py b/src/cli.py
@@ -1,5 +1,5 @@
 """
-Command-line interface to run AngioEye pipelines over a collection of HDF5 files.
+Command-line interface to run EyeFlow pipelines over a collection of HDF5 files.
 
 Usage example:
     python cli.py --data data/ --pipelines pipelines.txt --postprocess postprocess.txt --output ./results --zip --zip-name my_run.zip
@@ -359,7 +359,7 @@ def _zip_progress(done: int, total: int, _rel_path: Path) -> None:
 
 def main(argv: Sequence[str] | None = None) -> int:
     parser = argparse.ArgumentParser(
-        description="Run AngioEye pipelines over a folder of HDF5 files."
+        description="Run EyeFlow pipelines over a folder of HDF5 files."
     )
     parser.add_argument(
         "-d",
diff --git a/src/eye_flow.py b/src/eye_flow.py
@@ -89,7 +89,7 @@ def _hide(self, _event=None) -> None:
 class ProcessApp(_BaseAppTk):
     def __init__(self) -> None:
         super().__init__()
-        self.title("AngioEye")
+        self.title("EyeFlow")
         self.settings_store = AppSettingsStore()
         self._settings_warning_shown = False
         self._ensure_default_settings()
@@ -260,7 +260,7 @@ def _build_minimal_view(self, parent: ttk.Frame) -> None:
 
         self.minimal_title_label = ttk.Label(
             content,
-            text="AngioEye",
+            text="EyeFlow",
             font=self._get_minimal_title_font(),
         )
         self.minimal_title_label.grid(row=0, column=0, pady=(0, 10))
@@ -451,7 +451,7 @@ def _resource_roots(self) -> list[Path]:
 
     def _resolve_logo_path(self) -> Path | None:
         for root in self._resource_roots():
-            candidate = root / "Angioeye_logo.png"
+            candidate = root / "EyeFlow_logo.png"
             if candidate.is_file():
                 return candidate
         return None
@@ -658,7 +658,7 @@ def _default_output_stem(self, input_path: Path) -> str:
         else:
             base_name = input_path.name
         base_name = base_name or "output"
-        return f"{base_name}_angioeye"
+        return f"{base_name}_eyeflow"
 
     def _default_archive_name(self, input_path: Path) -> str:
         return f"{self._default_output_stem(input_path)}.zip"
diff --git a/src/launcher.py b/src/launcher.py
@@ -22,7 +22,7 @@ def _find_checkout_src(
 
 
 def _load_local_module(module_name: str, module_path: Path) -> Any:
-    module_alias = f"_angioeye_checkout_{module_name.replace('.', '_')}"
+    module_alias = f"_eyeflow_checkout_{module_name.replace('.', '_')}"
     spec = importlib.util.spec_from_file_location(module_alias, module_path)
     if spec is None or spec.loader is None:
         raise ImportError(f"Cannot load module from {module_path}")
@@ -54,7 +54,7 @@ def _call_entry(
 
 
 def main() -> Any:
-    return _call_entry("angio_eye", "angio_eye.py", "main")
+    return _call_entry("eye_flow", "eye_flow.py", "main")
 
 
 def cli_main(argv: list[str] | None = None) -> Any:
diff --git a/src/pipelines/__init__.py b/src/pipelines/__init__.py
@@ -17,7 +17,7 @@
 
 def _extend_with_external_pipeline_dir() -> None:
     candidates: list[Path] = []
-    env_path = os.getenv("ANGIOEYE_PIPELINES_DIR")
+    env_path = os.getenv("EYEFLOW_PIPELINES_DIR")
     if env_path:
         candidates.append(Path(env_path))
     if getattr(sys, "frozen", False):
diff --git a/src/pipelines/core/utils.py b/src/pipelines/core/utils.py
@@ -33,9 +33,9 @@ def _copy_input_contents(source_file: str | Path | None, dest: h5py.File) -> Non
 def _ensure_pipelines_group(h5file: h5py.File) -> h5py.Group:
     """Return a pipelines group, creating it when missing."""
     return (
-        h5file["AngioEye"]
-        if "AngioEye" in h5file
-        else h5file.create_group("AngioEye")
+        h5file["EyeFlow"]
+        if "EyeFlow" in h5file
+        else h5file.create_group("EyeFlow")
     )
 
 
@@ -182,7 +182,7 @@ def write_combined_results_h5(
     """
     Write multiple pipeline results into a single HDF5 file.
 
-    The file groups results under /AngioEye/<safe_pipeline_name>/<metric_name>.
+    The file groups results under /EyeFlow/<safe_pipeline_name>/<metric_name>.
     """
     out_path = Path(path)
     out_path.parent.mkdir(parents=True, exist_ok=True)
diff --git a/src/postprocess/__init__.py b/src/postprocess/__init__.py
@@ -18,7 +18,7 @@
 
 def _extend_with_external_postprocess_dir() -> None:
     candidates: list[Path] = []
-    env_path = os.getenv("ANGIOEYE_POSTPROCESS_DIR")
+    env_path = os.getenv("EYEFLOW_POSTPROCESS_DIR")
     if env_path:
         candidates.append(Path(env_path))
     if getattr(sys, "frozen", False):
diff --git a/src/scripts/build_installer.py b/src/scripts/build_installer.py
@@ -9,11 +9,11 @@
 from pathlib import Path
 
 PROJECT_ROOT = Path(__file__).resolve().parents[2]
-SPEC_FILE = PROJECT_ROOT / "AngioEye.spec"
-ISS_FILE = PROJECT_ROOT / "installer" / "AngioEye.iss"
+SPEC_FILE = PROJECT_ROOT / "EyeFlow.spec"
+ISS_FILE = PROJECT_ROOT / "installer" / "EyeFlow.iss"
 DIST_DIR = PROJECT_ROOT / "dist"
-ONEDIR_BUILD = DIST_DIR / "AngioEye"
-ONEFILE_BUILD = DIST_DIR / "AngioEye.exe"
+ONEDIR_BUILD = DIST_DIR / "EyeFlow"
+ONEFILE_BUILD = DIST_DIR / "EyeFlow.exe"
 PAYLOAD_DIR = PROJECT_ROOT / "build" / "installer_payload"
 INSTALLER_OUTPUT_DIR = DIST_DIR
 VERSION_PATTERN = re.compile(r'^version\s*=\s*"([^"]+)"\s*$')
@@ -26,7 +26,7 @@
     PROJECT_ROOT / "LICENSE",
     PROJECT_ROOT / "THIRD_PARTY_NOTICES",
     PROJECT_ROOT / "README.md",
-    PROJECT_ROOT / "AngioEye.ico",
+    PROJECT_ROOT / "EyeFlow.ico",
     PROJECT_ROOT / "default_settings.json",
     PROJECT_ROOT / "pyproject.toml",
 )
@@ -35,7 +35,7 @@
 
 def _parse_args() -> argparse.Namespace:
     parser = argparse.ArgumentParser(
-        description="Build the AngioEye Windows installer with PyInstaller and Inno Setup."
+        description="Build the EyeFlow Windows installer with PyInstaller and Inno Setup."
     )
     parser.add_argument(
         "--skip-pyinstaller",
@@ -140,7 +140,7 @@ def _prepare_payload() -> None:
     PAYLOAD_DIR.mkdir(parents=True, exist_ok=True)
 
     build_targets: list[Path] = []
-    onedir_exe = ONEDIR_BUILD / "AngioEye.exe"
+    onedir_exe = ONEDIR_BUILD / "EyeFlow.exe"
     if onedir_exe.is_file():
         build_targets.append(onedir_exe)
     if ONEFILE_BUILD.is_file():
@@ -154,7 +154,7 @@ def _prepare_payload() -> None:
 
     selected_target = max(build_targets, key=lambda path: path.stat().st_mtime)
     if selected_target == ONEFILE_BUILD:
-        shutil.copy2(selected_target, PAYLOAD_DIR / "AngioEye.exe")
+        shutil.copy2(selected_target, PAYLOAD_DIR / "EyeFlow.exe")
     else:
         _copy_tree_contents(ONEDIR_BUILD, PAYLOAD_DIR)
 
@@ -197,7 +197,7 @@ def main() -> None:
     _prepare_payload()
     _run_inno_setup(iscc_path, app_version)
 
-    installer_name = INSTALLER_OUTPUT_DIR / f"AngioEye-setup-{app_version}.exe"
+    installer_name = INSTALLER_OUTPUT_DIR / f"EyeFlow-setup-{app_version}.exe"
     print(f"Installer created at {installer_name}")
 
 
diff --git a/src/scripts/gen_optional_reqs.py b/src/scripts/gen_optional_reqs.py
@@ -2,7 +2,7 @@
 """
 Generate an optional requirements file by aggregating REQUIRES lists from all pipeline modules.
 
-Output: AngioEye/pipelines/requirements-optional.txt
+Output: EyeFlow/pipelines/requirements-optional.txt
 Usage:   python scripts/gen_optional_reqs.py
 """
 
@@ -12,7 +12,7 @@
 from pathlib import Path
 
 PROJECT_ROOT = Path(__file__).resolve().parents[1]
-PIPELINES_DIR = PROJECT_ROOT / "AngioEye" / "pipelines"
+PIPELINES_DIR = PROJECT_ROOT / "EyeFlow" / "pipelines"
 OUTPUT_PATH = PIPELINES_DIR / "requirements-optional.txt"
 
 
diff --git a/src/scripts/ruff_linter.py b/src/scripts/ruff_linter.py
@@ -33,7 +33,7 @@ def run_ruff(fix=False):
 
 
 def main():
-    parser = argparse.ArgumentParser(description="AngioEye Linting Tool")
+    parser = argparse.ArgumentParser(description="EyeFlow Linting Tool")
     parser.add_argument("--fix", action="store_true", help="Automatically fix issues")
     args = parser.parse_args()
     run_ruff(fix=args.fix)
diff --git a/test/test_app_settings.py b/test/test_app_settings.py
@@ -23,13 +23,13 @@ def test_default_settings_path_prefers_appdata_and_version(self) -> None:
             "os.environ",
             {
                 "APPDATA": r"C:\Users\Test\AppData\Roaming",
-                "ANGIOEYE_VERSION": "9.9.9",
+                "EYEFLOW_VERSION": "9.9.9",
             },
             clear=True,
         ):
             self.assertEqual(
                 default_settings_path(),
-                Path(r"C:\Users\Test\AppData\Roaming\AngioEye\9.9.9\settings.json"),
+                Path(r"C:\Users\Test\AppData\Roaming\EyeFlow\9.9.9\settings.json"),
             )
 
     def test_normalize_pipeline_visibility_defaults_first_run_to_visible(self) -> None:
diff --git a/test/test_eye_flow.py b/test/test_eye_flow.py
diff --git a/test/test_launcher.py b/test/test_launcher.py
