1+
2+ <!DOCTYPE html>
3+
4+
5+ < html lang ="en " data-content_root ="../ " >
6+
7+ < head >
8+ < meta charset ="utf-8 " />
9+ < meta name ="viewport " content ="width=device-width, initial-scale=1.0 " />
10+ < title > Overview: module code — circStudio</ title >
11+
12+
13+
14+ < script data-cfasync ="false ">
15+ document . documentElement . dataset . mode = localStorage . getItem ( "mode" ) || "" ;
16+ document . documentElement . dataset . theme = localStorage . getItem ( "theme" ) || "" ;
17+ </ script >
18+
19+ <!-- Loaded before other Sphinx assets -->
20+ < link href ="../_static/styles/theme.css?digest=dfe6caa3a7d634c4db9b " rel ="stylesheet " />
21+ < link href ="../_static/styles/bootstrap.css?digest=dfe6caa3a7d634c4db9b " rel ="stylesheet " />
22+ < link href ="../_static/styles/pydata-sphinx-theme.css?digest=dfe6caa3a7d634c4db9b " rel ="stylesheet " />
23+
24+
25+ < link href ="../_static/vendor/fontawesome/6.5.2/css/all.min.css?digest=dfe6caa3a7d634c4db9b " rel ="stylesheet " />
26+ < link rel ="preload " as ="font " type ="font/woff2 " crossorigin href ="../_static/vendor/fontawesome/6.5.2/webfonts/fa-solid-900.woff2 " />
27+ < link rel ="preload " as ="font " type ="font/woff2 " crossorigin href ="../_static/vendor/fontawesome/6.5.2/webfonts/fa-brands-400.woff2 " />
28+ < link rel ="preload " as ="font " type ="font/woff2 " crossorigin href ="../_static/vendor/fontawesome/6.5.2/webfonts/fa-regular-400.woff2 " />
29+
30+ < link rel ="stylesheet " type ="text/css " href ="../_static/pygments.css?v=8f2a1f02 " />
31+ < link rel ="stylesheet " type ="text/css " href ="../_static/styles/sphinx-book-theme.css?v=eba8b062 " />
32+ < link rel ="stylesheet " type ="text/css " href ="../_static/mystnb.8ecb98da25f57f5357bf6f572d296f466b2cfe2517ffebfabe82451661e28f02.css " />
33+
34+ <!-- Pre-loaded scripts that we'll load fully later -->
35+ < link rel ="preload " as ="script " href ="../_static/scripts/bootstrap.js?digest=dfe6caa3a7d634c4db9b " />
36+ < link rel ="preload " as ="script " href ="../_static/scripts/pydata-sphinx-theme.js?digest=dfe6caa3a7d634c4db9b " />
37+ < script src ="../_static/vendor/fontawesome/6.5.2/js/all.min.js?digest=dfe6caa3a7d634c4db9b "> </ script >
38+
39+ < script src ="../_static/documentation_options.js?v=2a0ef813 "> </ script >
40+ < script src ="../_static/doctools.js?v=9bcbadda "> </ script >
41+ < script src ="../_static/sphinx_highlight.js?v=dc90522c "> </ script >
42+ < script src ="../_static/scripts/sphinx-book-theme.js?v=887ef09a "> </ script >
43+ < script > DOCUMENTATION_OPTIONS . pagename = '_modules/index' ; </ script >
44+ < link rel ="index " title ="Index " href ="../genindex.html " />
45+ < link rel ="search " title ="Search " href ="../search.html " />
46+ < meta name ="viewport " content ="width=device-width, initial-scale=1 "/>
47+ < meta name ="docsearch:language " content ="en "/>
48+ </ head >
49+
50+
51+ < body data-bs-spy ="scroll " data-bs-target =".bd-toc-nav " data-offset ="180 " data-bs-root-margin ="0px 0px -60% " data-default-mode ="">
52+
53+
54+
55+ < div id ="pst-skip-link " class ="skip-link d-print-none "> < a href ="#main-content "> Skip to main content</ a > </ div >
56+
57+ < div id ="pst-scroll-pixel-helper "> </ div >
58+
59+ < button type ="button " class ="btn rounded-pill " id ="pst-back-to-top ">
60+ < i class ="fa-solid fa-arrow-up "> </ i > Back to top</ button >
61+
62+
63+ < input type ="checkbox "
64+ class ="sidebar-toggle "
65+ id ="pst-primary-sidebar-checkbox "/>
66+ < label class ="overlay overlay-primary " for ="pst-primary-sidebar-checkbox "> </ label >
67+
68+ < input type ="checkbox "
69+ class ="sidebar-toggle "
70+ id ="pst-secondary-sidebar-checkbox "/>
71+ < label class ="overlay overlay-secondary " for ="pst-secondary-sidebar-checkbox "> </ label >
72+
73+ < div class ="search-button__wrapper ">
74+ < div class ="search-button__overlay "> </ div >
75+ < div class ="search-button__search-container ">
76+ < form class ="bd-search d-flex align-items-center "
77+ action ="../search.html "
78+ method ="get ">
79+ < i class ="fa-solid fa-magnifying-glass "> </ i >
80+ < input type ="search "
81+ class ="form-control "
82+ name ="q "
83+ id ="search-input "
84+ placeholder ="Search... "
85+ aria-label ="Search... "
86+ autocomplete ="off "
87+ autocorrect ="off "
88+ autocapitalize ="off "
89+ spellcheck ="false "/>
90+ < span class ="search-button__kbd-shortcut "> < kbd class ="kbd-shortcut__modifier "> Ctrl</ kbd > +< kbd > K</ kbd > </ span >
91+ </ form > </ div >
92+ </ div >
93+
94+ < div class ="pst-async-banner-revealer d-none ">
95+ < aside id ="bd-header-version-warning " class ="d-none d-print-none " aria-label ="Version warning "> </ aside >
96+ </ div >
97+
98+
99+ < header class ="bd-header navbar navbar-expand-lg bd-navbar d-print-none ">
100+ </ header >
101+
102+
103+ < div class ="bd-container ">
104+ < div class ="bd-container__inner bd-page-width ">
105+
106+
107+
108+
109+
110+ < div class ="bd-sidebar-primary bd-sidebar ">
111+
112+
113+
114+ < div class ="sidebar-header-items sidebar-primary__section ">
115+
116+
117+
118+
119+ </ div >
120+
121+ < div class ="sidebar-primary-items__start sidebar-primary__section ">
122+ < div class ="sidebar-primary-item ">
123+
124+
125+
126+
127+
128+ < a class ="navbar-brand logo " href ="../index.html ">
129+
130+
131+
132+
133+
134+
135+ < p class ="title logo__title "> circStudio</ p >
136+
137+ </ a > </ div >
138+ < div class ="sidebar-primary-item ">
139+
140+ < script >
141+ document . write ( `
142+ <button class="btn search-button-field search-button__button" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
143+ <i class="fa-solid fa-magnifying-glass"></i>
144+ <span class="search-button__default-text">Search</span>
145+ <span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd class="kbd-shortcut__modifier">K</kbd></span>
146+ </button>
147+ ` ) ;
148+ </ script > </ div >
149+ < div class ="sidebar-primary-item "> < nav class ="bd-links bd-docs-nav " aria-label ="Main ">
150+ < div class ="bd-toc-item navbar-nav active ">
151+ < p aria-level ="2 " class ="caption " role ="heading "> < span class ="caption-text "> Contents:</ span > </ p >
152+ < ul class ="nav bd-sidenav ">
153+ < li class ="toctree-l1 "> < a class ="reference internal " href ="../tutorial_1.html "> Opening and processing actigraphy data</ a > </ li >
154+ < li class ="toctree-l1 "> < a class ="reference internal " href ="../tutorial_2.html "> Preprocessing actigraphy data</ a > </ li >
155+ < li class ="toctree-l1 "> < a class ="reference internal " href ="../tutorial_3.html "> Calculating common activity and light metrics</ a > </ li >
156+ < li class ="toctree-l1 "> < a class ="reference internal " href ="../tutorial_4.html "> Mathematical modeling of circadian rhythms</ a > </ li >
157+
158+ < li class ="toctree-l1 "> < a class ="reference internal " href ="../api.html "> API Reference</ a > </ li >
159+
160+
161+
162+
163+
164+ </ ul >
165+
166+ </ div >
167+ </ nav > </ div >
168+ </ div >
169+
170+
171+ < div class ="sidebar-primary-items__end sidebar-primary__section ">
172+ </ div >
173+
174+ < div id ="rtd-footer-container "> </ div >
175+
176+
177+ </ div >
178+
179+ < main id ="main-content " class ="bd-main " role ="main ">
180+
181+
182+
183+ < div class ="sbt-scroll-pixel-helper "> </ div >
184+
185+ < div class ="bd-content ">
186+ < div class ="bd-article-container ">
187+
188+ < div class ="bd-header-article d-print-none ">
189+ < div class ="header-article-items header-article__inner ">
190+
191+ < div class ="header-article-items__start ">
192+
193+ < div class ="header-article-item "> < button class ="sidebar-toggle primary-toggle btn btn-sm " title ="Toggle primary sidebar " data-bs-placement ="bottom " data-bs-toggle ="tooltip ">
194+ < span class ="fa-solid fa-bars "> </ span >
195+ </ button > </ div >
196+
197+ </ div >
198+
199+
200+ < div class ="header-article-items__end ">
201+
202+ < div class ="header-article-item ">
203+
204+ < div class ="article-header-buttons ">
205+
206+
207+
208+ < button onclick ="toggleFullScreen() "
209+ class ="btn btn-sm btn-fullscreen-button "
210+ title ="Fullscreen mode "
211+ data-bs-placement ="bottom " data-bs-toggle ="tooltip "
212+ >
213+
214+
215+ < span class ="btn__icon-container ">
216+ < i class ="fas fa-expand "> </ i >
217+ </ span >
218+
219+ </ button >
220+
221+
222+
223+ < script >
224+ document . write ( `
225+ <button class="btn btn-sm nav-link pst-navbar-icon theme-switch-button" title="light/dark" aria-label="light/dark" data-bs-placement="bottom" data-bs-toggle="tooltip">
226+ <i class="theme-switch fa-solid fa-sun fa-lg" data-mode="light"></i>
227+ <i class="theme-switch fa-solid fa-moon fa-lg" data-mode="dark"></i>
228+ <i class="theme-switch fa-solid fa-circle-half-stroke fa-lg" data-mode="auto"></i>
229+ </button>
230+ ` ) ;
231+ </ script >
232+
233+
234+ < script >
235+ document . write ( `
236+ <button class="btn btn-sm pst-navbar-icon search-button search-button__button" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
237+ <i class="fa-solid fa-magnifying-glass fa-lg"></i>
238+ </button>
239+ ` ) ;
240+ </ script >
241+
242+ </ div > </ div >
243+
244+ </ div >
245+
246+ </ div >
247+ </ div >
248+
249+
250+
251+ < div id ="jb-print-docs-body " class ="onlyprint ">
252+ < h1 > </ h1 >
253+ <!-- Table of contents -->
254+ < div id ="print-main-content ">
255+ < div id ="jb-print-toc ">
256+
257+ </ div >
258+ </ div >
259+ </ div >
260+
261+
262+
263+ < div id ="searchbox "> </ div >
264+ < article class ="bd-article ">
265+
266+ < h1 > All modules for which code is available</ h1 >
267+ < ul > < li > < a href ="circStudio/analysis/cosinor/cosinor.html "> circStudio.analysis.cosinor.cosinor</ a > </ li >
268+ < li > < a href ="circStudio/analysis/metrics/metrics.html "> circStudio.analysis.metrics.metrics</ a > </ li >
269+ < li > < a href ="circStudio/analysis/models/math_models.html "> circStudio.analysis.models.math_models</ a > </ li >
270+ < li > < a href ="circStudio/analysis/sleep/diary.html "> circStudio.analysis.sleep.diary</ a > </ li >
271+ < li > < a href ="circStudio/analysis/sleep/sleep.html "> circStudio.analysis.sleep.sleep</ a > </ li >
272+ < li > < a href ="circStudio/io/base.html "> circStudio.io.base</ a > </ li >
273+ < li > < a href ="circStudio/io/mask.html "> circStudio.io.mask</ a > </ li >
274+ </ ul >
275+
276+ </ article >
277+
278+
279+
280+
281+
282+
283+ < footer class ="prev-next-footer d-print-none ">
284+
285+ < div class ="prev-next-area ">
286+ </ div >
287+ </ footer >
288+
289+ </ div >
290+
291+
292+
293+
294+ </ div >
295+ < footer class ="bd-footer-content ">
296+
297+ < div class ="bd-footer-content__inner container ">
298+
299+ < div class ="footer-item ">
300+
301+ < p class ="component-author ">
302+ By Daniel Marques
303+ </ p >
304+
305+ </ div >
306+
307+ < div class ="footer-item ">
308+
309+
310+ </ div >
311+
312+ < div class ="footer-item ">
313+
314+ </ div >
315+
316+ < div class ="footer-item ">
317+
318+ </ div >
319+
320+ </ div >
321+ </ footer >
322+
323+
324+ </ main >
325+ </ div >
326+ </ div >
327+
328+ <!-- Scripts loaded after <body> so the DOM is not blocked -->
329+ < script src ="../_static/scripts/bootstrap.js?digest=dfe6caa3a7d634c4db9b "> </ script >
330+ < script src ="../_static/scripts/pydata-sphinx-theme.js?digest=dfe6caa3a7d634c4db9b "> </ script >
331+
332+ < footer class ="bd-footer ">
333+ </ footer >
334+ </ body >
335+ </ html >
0 commit comments