finish documentation

Author: djmarques

docs/source/api.rst

@@ -1,7 +1,61 @@
 API Reference
 =============
 
-.. automodule:: main.math
+.. contents:: Table of Contents
+   :local:
+   :depth: 2
+
+
+Data I/O
+========
+
+.. automodule:: circStudio.io.base
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+.. automodule:: circStudio.io.mask
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+
+Rest-Activity Metrics
+=====================
+
+.. automodule:: circStudio.analysis.metrics.metrics
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+
+Cosinor Analysis
+================
+
+.. automodule:: circStudio.analysis.cosinor.cosinor
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+
+Mathematical Models
+===================
+
+.. automodule:: circStudio.analysis.models.math_models
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+
+Sleep Scoring and Diary
+=======================
+
+.. automodule:: circStudio.analysis.sleep.sleep
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+.. automodule:: circStudio.analysis.sleep.diary
    :members:
    :undoc-members:
    :show-inheritance:

docs/source/index.rst

@@ -6,14 +6,15 @@
 circStudio documentation
 ========================
 
-Add your content using ``reStructuredText`` syntax. See the
-`reStructuredText <https://www.sphinx-doc.org/en/master/usage/restructuredtext/index.html>`_
-documentation for details.
-
+Welcome to `circStudio`, a Python package for mathematical modelling of circadian rhythms using actigraphy data,
+built on top of the open-source package `pyActigraphy`.
 
 .. toctree::
    :maxdepth: 2
    :caption: Contents:
 
-   opening_files
+   tutorial_1
+   tutorial_2
+   tutorial_3
+   tutorial_4
    api