bioc > v1.2

ritamtbsilva · ritamtbsilva · commit d319036a97b3 · 2026-05-08T15:24:52.000+01:00
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: markeR
 Title: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers
-Version: 1.1.2
+Version: 1.2
 Authors@R: 
     c(
       person("Rita", "Martins-Silva", 
diff --git a/README.Rmd b/README.Rmd
@@ -30,7 +30,7 @@ knitr::opts_chunk$set(
 
 > **To cite `markeR` please use:** 
 >
-> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). _markeR: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers_. doi:10.18129/B9.bioc.markeR, R package version 1.1.2, https://bioconductor.org/packages/markeR.
+> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). _markeR: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers_. doi:10.18129/B9.bioc.markeR, R package version 1.2, https://bioconductor.org/packages/markeR.
  
 The folder `inst/Paper/` is in the **paper** branch and contains all scripts and materials used in the original `markeR` paper to reproduce analyses and figures.  You can browse it [here](https://github.com/DiseaseTranscriptomicsLab/markeR/tree/paper/inst/Paper).
 
diff --git a/README.md b/README.md
@@ -26,7 +26,7 @@ across experimental and clinical phenotypes.
 >
 > Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). *markeR: An R
 > Toolkit for Evaluating Gene Signatures as Phenotypic Markers*.
-> <doi:10.18129/B9.bioc.markeR>, R package version 1.1.2,
+> <doi:10.18129/B9.bioc.markeR>, R package version 1.2,
 > <https://bioconductor.org/packages/markeR>.
 
 The folder `inst/Paper/` is in the **paper** branch and contains all

Original file line number	Diff line number	Diff line change
`@@ -30,7 +30,7 @@ knitr::opts_chunk$set(`
`30`	`30`
`31`	`31`	> To cite `markeR` please use:
`32`	`32`	`>`
`33`		`-> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). _markeR: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers_. doi:10.18129/B9.bioc.markeR, R package version 1.1.2, https://bioconductor.org/packages/markeR.`
	`33`	`+> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). _markeR: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers_. doi:10.18129/B9.bioc.markeR, R package version 1.2, https://bioconductor.org/packages/markeR.`
`34`	`34`
`35`	`35`	The folder `inst/Paper/` is in the paper branch and contains all scripts and materials used in the original `markeR` paper to reproduce analyses and figures. You can browse it [here](https://github.com/DiseaseTranscriptomicsLab/markeR/tree/paper/inst/Paper).
`36`	`36`
Original file line number	Diff line number	Diff line change
`@@ -26,7 +26,7 @@ across experimental and clinical phenotypes.`
`26`	`26`	`>`
`27`	`27`	`> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). *markeR: An R`
`28`	`28`	`> Toolkit for Evaluating Gene Signatures as Phenotypic Markers*.`
`29`		`-> <doi:10.18129/B9.bioc.markeR>, R package version 1.1.2,`
	`29`	`+> <doi:10.18129/B9.bioc.markeR>, R package version 1.2,`
`30`	`30`	`> <https://bioconductor.org/packages/markeR>.`
`31`	`31`
`32`	`32`	The folder `inst/Paper/` is in the paper branch and contains all