Revert "removing old yaml file that has paths to data that point to file locations that are dependent on system"

This reverts commit a07b01b.

Author: Higgins00

sim.yaml

@@ -0,0 +1,86 @@
+# Input file for wfirst.py
+
+# Number of procs to limit star parallelisation to for memory reasons
+starproc  : 20
+
+# Split over nodes/procs with MPI
+mpi       : True
+
+# If overwrite is False, the job will crash if the output directories already exist to safeguard against overwriting results.
+overwrite : False
+
+# Draw and save full SCA images. In this mode, the isolated single-galaxy postage stamps will still be saved.
+draw_sca            : True
+
+# Limit which SCAs are drawn. Can be a single number or list. None or not defined will simulate all.
+sca  : 1
+
+# initialise random seed
+random_seed         : 314
+
+# output directory
+out_path            : /fs/scratch/cond0083/wfirst_sim_out/
+# output meds (and other) filename prefix
+output_meds         : 'test_new'
+# Minimum postage stamp size (all stamps will be multiples of this)
+stamp_size   : 32
+# Number of stamp sizes
+num_sizes : 9
+# nside of meds tiling (healpix pixels). Choose so that full meds can be held in memory of node.
+nside               : 256
+
+# File containing dither information
+dither_file         : /users/PCON0003/cond0083/observing_sequence_hlsonly_5yr.fits
+
+# PSF properties
+# To do a more exact calculation of the chromaticity and pupil plane configuration, set the `approximate_struts` and the `n_waves` keyword to defaults
+approximate_struts  : True # Approximate strut configuration
+n_waves             : 10 # Number of wavelengths used to create chromatic model of PSF
+extra_aberrations   : None # Include (additive) changes specification zernike parameters. None for default.
+#los_motion         : 0.015 # Include extra jitter in rms of arcsec. Ignored if not defined.
+#los_motion_e1      : 0.3 # Shear to apply to jitter gaussian to simulate orientation-dependent rms
+#los_motion_e2      : 0.0
+# Draw stars into SCA
+draw_stars          : True
+# Catalog containing star positions and fluxes
+star_sample         : /fs/scratch/cond0083/gaia_stars.fits
+# Write true psf to stamps for meds
+draw_true_psf       : True
+# Oversampling factor for true psf stamps
+oversample          : 8
+# Size of true psf stamps in wfirst pixel units
+psf_stampsize       : 8
+
+# Galaxy model info
+# Distribution of objects in ra, dec
+gal_dist            : /fs/scratch/cond0083/radec_sub.fits
+# Type of galaxy model: real cosmos objects (2), models from real cosmos objects (1), sersic disk (0) - Only 0 works now
+gal_type            : 0
+# Photometric properties to draw from. Must provide file if gal_type == 0
+gal_sample          : /users/PCON0003/cond0083/Simulated_WFIRST+LSST_photometry_catalog_CANDELSbased.fits
+# Type of sersic model to build. Disk, bulge, or composite (sum of disk + bulge + star-forming knots)
+gal_model : composite
+# Number of random, irregular star-forming knots to include in disk of object.
+knots  : 25
+# List of shears to select from
+shear_list          : [[0.2,0.0],[-0.2,0.0],[0.0,0.2],[0.0,-0.2]]
+# SEDs for galaxy components
+sedpath_E           : /users/PCON0003/cond0083/GalSim/share/SEDs/NGC_4926_spec.dat
+sedpath_Scd         : /users/PCON0003/cond0083/GalSim/share/SEDs/NGC_4670_spec.dat
+sedpath_Im          : /users/PCON0003/cond0083/GalSim/share/SEDs/Mrk_33_spec.dat
+
+# Files for cosmos galaxy models
+cat_name            : real_galaxy_catalog_25.2.fits
+cat_dir             : /fs/scratch/cond0083/COSMOS_25.2_training_sample
+
+# Detector options
+use_background      : True # Adds/subtracts sky background to images
+sub_true_background : True # Currently if False, subtracts background without including impact of dark current in the subtraction.
+use_poisson_noise   : True # Add poisson noise to images
+use_recip_failure   : True # Add reciprocity failure effect
+use_dark_current    : True # Add dark current
+use_nonlinearity    : True # Apply nonlinearity
+use_interpix_cap    : True # Add interpixel capacitance effect
+use_read_noise      : True # Add read noise
+use_persistence     : False # Currently not implemented.
+save_diff           : False # Save difference images during add_effects() - will do this for every call and overwrite the previous call's files, so be prepared to kill job otherwise will be very slow.