Fix fill values in all Omega fields#428

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xylar wants to merge 25 commits into

E3SM-Project:developfrom

xylar:omega/fix-fill-values

Commits on Jul 2, 2026

Fix biharmonic velocity mixing at boundary vertices

xylar
and
claude
committed
Add a design document for fixing fill values
xylar
committed
Add fill value constant
xylar
committed
Fill fields with fill values during attachData()
xylar
committed
Update fill values in all fields
xylar
committed
Determine fill values automatically by array type
xylar
committed
Drop manually assigned fill values
xylar
committed
Make detection of fill values in VertCoord reads less brittle
xylar
committed
Add FillOnAttach argument to attachData()
xylar
committed
Reorder 2 cases so we attach first, then fill in the array
xylar
committed
Fill fluxes on edges first with zeros over full physical range
xylar
committed
Add fill-value CTests
xylar
committed
Update the docs
xylar
committed
Enforce fill and zero values in NormalVelocity from IC
xylar
committed
Fix bounds on DivHU computation to avoid inactive layers
xylar
committed
Mask NormalVelocity in time stepper
xylar
committed
Apply suggestions from code review

xylar
and
mwarusz
committed
Apply edge layer mask to NormalVelocity in OceanState constructor

cbegeman
authored and
xylar
committed
Create applyCellLayerMask, applyVertexLayerMask

cbegeman
authored and
xylar
committed
Use single method in OceanRun for applying fill values to OceanState variables

cbegeman
authored and
xylar
committed
Fixup rebase on vmix shear changes

cbegeman
authored and
xylar
committed
Fixup rebase on surface stress changes

cbegeman
authored and
xylar
committed
Add unit tests for applyCellLayerMask and applyVertexLayerMask

xylar
and
claude
committed
Update FillValues design doc to match implementation

xylar
and
claude
committed
Document VertCoord layer masking in dev and user guides

xylar
and
claude
committed

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Fix fill values in all Omega fields#428

Fix fill values in all Omega fields#428
xylar wants to merge 25 commits into
E3SM-Project:developfrom
xylar:omega/fix-fill-values

Commits on Jul 2, 2026

Fix biharmonic velocity mixing at boundary vertices

Add a design document for fixing fill values

Add fill value constant

Fill fields with fill values during attachData()

Update fill values in all fields

Determine fill values automatically by array type

Drop manually assigned fill values

Make detection of fill values in VertCoord reads less brittle

Add FillOnAttach argument to attachData()

Reorder 2 cases so we attach first, then fill in the array

Fill fluxes on edges first with zeros over full physical range

Add fill-value CTests

Update the docs

Enforce fill and zero values in NormalVelocity from IC

Fix bounds on DivHU computation to avoid inactive layers

Mask NormalVelocity in time stepper

Apply suggestions from code review

Apply edge layer mask to NormalVelocity in OceanState constructor

Create applyCellLayerMask, applyVertexLayerMask

Use single method in OceanRun for applying fill values to OceanState variables

Fixup rebase on vmix shear changes

Fixup rebase on surface stress changes

Add unit tests for applyCellLayerMask and applyVertexLayerMask

Update FillValues design doc to match implementation

Document VertCoord layer masking in dev and user guides