You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Download these files and make sure they are in the same directory
67
67
where you are creating your Jupyter notebook.
68
68
@@ -235,7 +235,7 @@ Seq('GATC')
235
235
236
236
`SeqIO` enables reading in sequences from FASTA files and storing the data in a `SeqRecord`. Addtionally `SeqIO` provides tools for writing sequence data to a file.
237
237
238
-
We will read in the example file [`NC_005816.fna`](https://github.com/EEOB-BioData/BCB546X-Fall2019/blob/master/course-files/biopython/NC_005816.fna) using `SeqIO`.
238
+
We will read in the example file [`NC_005816.fna`](https://github.com/EEOB-BioData/BCB546-Spring2021/blob/master/course-files/biopython/NC_005816.fna) using `SeqIO`.
Using `SeqIO` we can read in several sequences from a file and store
283
283
them in a list of `SeqRecord` objects from a file. The file
284
-
[`example.fasta`](https://github.com/EEOB-BioData/BCB546X-Fall2019/blob/master/course-files/biopython/example.fasta) looks like this:
284
+
[`example.fasta`](https://github.com/EEOB-BioData/BCB546-Spring2021/blob/master/course-files/biopython/example.fasta) looks like this:
285
285
286
286
```
287
287
>EAS54_6_R1_2_1_413_324
@@ -393,7 +393,7 @@ help(NCBIWWW.qblast)
393
393
{: .python}
394
394
395
395
396
-
Next we can read in a sequence that is stored in a FASTA file called [`test.fasta`](https://github.com/EEOB-BioData/BCB546X-Fall2019/blob/master/course-files/biopython/test.fasta).
396
+
Next we can read in a sequence that is stored in a FASTA file called [`test.fasta`](https://github.com/EEOB-BioData/BCB546-Spring2021/blob/master/course-files/biopython/test.fasta).
0 commit comments