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_episodes/06-biopython.md

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## Download Example Files
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This lesson will use the example files in the
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[`biopython`](https://github.com/EEOB-BioData/BCB546X-Fall2019/tree/master/course-files/biopython)
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[`biopython`](https://github.com/EEOB-BioData/BCB546-Spring2021/tree/master/course-files/biopython)
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folder of the course
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files in the `BCB546X-Fall2019` repository.
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files in the `BCB546-Spring2021` repository.
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Download these files and make sure they are in the same directory
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where you are creating your Jupyter notebook.
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`SeqIO` enables reading in sequences from FASTA files and storing the data in a `SeqRecord`. Addtionally `SeqIO` provides tools for writing sequence data to a file.
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We will read in the example file [`NC_005816.fna`](https://github.com/EEOB-BioData/BCB546X-Fall2019/blob/master/course-files/biopython/NC_005816.fna) using `SeqIO`.
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We will read in the example file [`NC_005816.fna`](https://github.com/EEOB-BioData/BCB546-Spring2021/blob/master/course-files/biopython/NC_005816.fna) using `SeqIO`.
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~~~
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from Bio import SeqIO
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Using `SeqIO` we can read in several sequences from a file and store
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them in a list of `SeqRecord` objects from a file. The file
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[`example.fasta`](https://github.com/EEOB-BioData/BCB546X-Fall2019/blob/master/course-files/biopython/example.fasta) looks like this:
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[`example.fasta`](https://github.com/EEOB-BioData/BCB546-Spring2021/blob/master/course-files/biopython/example.fasta) looks like this:
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```
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>EAS54_6_R1_2_1_413_324
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{: .python}
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Next we can read in a sequence that is stored in a FASTA file called [`test.fasta`](https://github.com/EEOB-BioData/BCB546X-Fall2019/blob/master/course-files/biopython/test.fasta).
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Next we can read in a sequence that is stored in a FASTA file called [`test.fasta`](https://github.com/EEOB-BioData/BCB546-Spring2021/blob/master/course-files/biopython/test.fasta).
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~~~
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query = SeqIO.read("test.fasta", format="fasta")
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~~~

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