{2025.06-001}[2025b] LAMMPS 22Jul2025_update3 by julianmorillo · Pull Request #52 · EESSI/dev.eessi.io-riscv

julianmorillo · 2026-02-23T11:26:56Z

No description provided.

julianmorillo · 2026-02-23T11:27:45Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-02-23T11:27:51Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.02/pr_52/265132

date	job status	comment
Feb 23 11:27:49 UTC 2026	submitted	job id `265132` awaits release by job manager
Feb 23 11:28:00 UTC 2026	released	job awaits launch by Slurm scheduler
Feb 23 11:29:05 UTC 2026	running	job `265132` is running
Feb 23 14:37:26 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-265132.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-riscv64-generic-riscv-1771857283.tar.zst` size: 32 MiB (33797750 bytes) entries: 1622 modules under 2025.06-001/software/linux/riscv64/generic/modules/all `Bison/3.8.2-GCCcore-14.3.0.lua` `Doxygen/1.14.0-GCCcore-14.3.0.lua` `GSL/2.8-GCC-14.3.0.lua` `HDF5/1.14.6-gompi-2025b.lua` `NASM/2.16.03-GCCcore-14.3.0.lua` `PCRE/8.45-GCCcore-14.3.0.lua` `PyYAML/6.0.2-GCCcore-14.3.0.lua` `Szip/2.1.1-GCCcore-14.3.0.lua` `archspec/0.2.5-GCCcore-14.3.0.lua` `libaec/1.1.4-GCCcore-14.3.0.lua` `libjpeg-turbo/3.1.1-GCCcore-14.3.0.lua` `libpng/1.6.50-GCCcore-14.3.0.lua` `libyaml/0.2.5-GCCcore-14.3.0.lua` software under 2025.06-001/software/linux/riscv64/generic/software `Bison/3.8.2-GCCcore-14.3.0` `Doxygen/1.14.0-GCCcore-14.3.0` `GSL/2.8-GCC-14.3.0` `HDF5/1.14.6-gompi-2025b` `NASM/2.16.03-GCCcore-14.3.0` `PCRE/8.45-GCCcore-14.3.0` `PyYAML/6.0.2-GCCcore-14.3.0` `Szip/2.1.1-GCCcore-14.3.0` `archspec/0.2.5-GCCcore-14.3.0` `libaec/1.1.4-GCCcore-14.3.0` `libjpeg-turbo/3.1.1-GCCcore-14.3.0` `libpng/1.6.50-GCCcore-14.3.0` `libyaml/0.2.5-GCCcore-14.3.0` reprod directories under 2025.06-001/software/linux/riscv64/generic/reprod no reprod directories in tarball other under 2025.06-001/software/linux/riscv64/generic no other files in tarball
Feb 23 14:37:26 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job265132.test` does not exist in job directory, or parsing it failed.

julianmorillo · 2026-02-26T13:13:27Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-02-26T13:13:35Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.02/pr_52/300159

date	job status	comment
Feb 26 13:13:33 UTC 2026	submitted	job id `300159` awaits release by job manager
Feb 26 13:13:42 UTC 2026	released	job awaits launch by Slurm scheduler
Feb 26 13:14:48 UTC 2026	running	job `300159` is running
Feb 27 12:27:33 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-300159.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-riscv64-generic-riscv-1772113100.tar.zst` size: 0 MiB (22 bytes) entries: 0 modules under 2025.06-001/software/linux/riscv64/generic/modules/all no module files in tarball software under 2025.06-001/software/linux/riscv64/generic/software no software packages in tarball reprod directories under 2025.06-001/software/linux/riscv64/generic/reprod no reprod directories in tarball other under 2025.06-001/software/linux/riscv64/generic no other files in tarball
Feb 27 12:27:33 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job300159.test` does not exist in job directory, or parsing it failed.

julianmorillo · 2026-03-13T14:09:32Z

Trying again now that MDI is installed...

julianmorillo · 2026-03-13T14:09:38Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-03-13T14:09:47Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.03/pr_52/302017

date	job status	comment
Mar 13 14:09:45 UTC 2026	submitted	job id `302017` awaits release by job manager
Mar 13 14:10:45 UTC 2026	released	job awaits launch by Slurm scheduler
Mar 13 14:11:50 UTC 2026	running	job `302017` is running
Mar 16 10:32:49 UTC 2026	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job302017.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Mar 16 10:32:49 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job302017.test` does not exist in job directory, or parsing it failed.

julianmorillo · 2026-03-16T10:30:49Z

It was stuck with these errors:

Pulling container image from docker://ghcr.io/eessi/build-node:debian13 to /tmp/eessi.573jOalbkl/ghcr.io_eessi_build_node_debian13.sif
INFO:    Converting OCI blobs to SIF format
INFO:    Starting build...
Getting image source signatures
Copying blob sha256:40582cdf9d0d3f4c0412808c50ec6da87f9877c6585b68ca7b5c30b66a8eedc3
Copying blob sha256:f092cb6a76bde9a7b3c337ea49e8a7adec71062dc5df097be99d3975e92bc53a
Copying blob sha256:54e00906ab936442b150684be182dbf9f615c00f4be7804c1ac63dcb14d126a3
Copying blob sha256:54100c00fa72f115594aabb3f78c225221859cab6ce0d64dfd00ab2b96369080
Copying blob sha256:e094e08ebe3c0c6829e1116d01b7082fb55087a6b31810bea9c78912d49d39ee
Copying blob sha256:c7be672aa83d2c064ef32da8912b46cfd6d96ccfae07c5cc59457b7a143948aa
Copying blob sha256:0cf2ffdf786ca350f97588685160cb77f9fbcf62304e9b1b94d38b517db4eff2
Copying blob sha256:7b4dda5f5b971024111d44ebaf46d7b2f7b35974618e9f682507516a83f1ee62
traceback: unexpected SPWRITE function runtime.morestack
fatal error: traceback

runtime stack:
runtime.throw({0x555cc0bb3085, 0x9})
        runtime/panic.go:1198 +0x60
runtime.gentraceback(0xffffffffffffffff, 0xffffffffffffffff, 0x0, 0x7ff6b85681a0, 0x0, 0x0, 0x7fffffff, 0x555cc1034468, 0x7ff6b569d4d8, 0x0)
        runtime/traceback.go:238 +0x1848
runtime.copystack(0x7ff6b85681a0, 0x1000)
        runtime/stack.go:918 +0x230
runtime.newstack()
        runtime/stack.go:1097 +0x4b8
runtime.morestack()
        runtime/asm_riscv64.s:202 +0x70

goroutine 294 [copystack]:
runtime.sigpanic()
        runtime/signal_unix.go:716 +0x10 fp=0x7ff6b85c8b58 sp=0x7ff6b85c8b58 pc=0x555cbffeaba0
runtime.morestack()
        runtime/asm_riscv64.s:171 +0x4 fp=0x7ff6b85c8b60 sp=0x7ff6b85c8b60 pc=0x555cc0004dbc
created by internal/singleflight.(*Group).DoChan
        internal/singleflight/singleflight.go:88 +0x38c

goroutine 1 [semacquire]:
sync.runtime_Semacquire(0x7ff6b852c658)
        runtime/sema.go:56 +0x3c
sync.(*WaitGroup).Wait(0x7ff6b852c650)
        sync/waitgroup.go:130 +0x98
github.com/containers/image/v5/copy.(*imageCopier).copyLayers.func2(0x7ff6b809e0a0, 0x7ff6b852c650, {0x7ff6b8471200, 0xb, 0xb}, {0x555cc10723c0, 0x7ff6b81d6680}, 0x7ff6b84d8368, 0x7ff6b83a2e40, 0x7ff6b84d8388)
        github.com/containers/image/v5@v5.20.0/copy/copy.go:984 +0xbc
github.com/containers/image/v5/copy.(*imageCopier).copyLayers(0x7ff6b809e0a0, {0x555cc10723c0, 0x7ff6b81d6680})
        github.com/containers/image/v5@v5.20.0/copy/copy.go:985 +0x4e0
github.com/containers/image/v5/copy.(*copier).copyOneImage(0x7ff6b86a4240, {0x555cc10723c0, 0x7ff6b81d6680}, 0x7ff6b853c078, 0x7ff6b84d8c88, 0x7ff6b8557a40, 0x7ff6b83a2b40, 0x0)
        github.com/containers/image/v5@v5.20.0/copy/copy.go:738 +0x10f4
github.com/containers/image/v5/copy.Image({0x555cc10723c0, 0x7ff6b81d6680}, 0x7ff6b853c078, {0x555cc1087508, 0x7ff6b84945a0}, {0x555cc1087388, 0x7ff6b8220230}, 0x7ff6b84d8c88)
        github.com/containers/image/v5@v5.20.0/copy/copy.go:308 +0xb84
github.com/sylabs/singularity/internal/pkg/build/oci.(*ImageReference).newImageSource(0x7ff6b805a1c0, {0x555cc10723c0, 0x7ff6b81d6680}, 0x7ff6b86f6000, {0x555cc104f6a0, 0x7ff6b800e020})

Let's try again in the hope that it was a temporary issue...

julianmorillo · 2026-04-10T08:28:45Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-04-10T08:28:53Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.04/pr_52/304909

date	job status	comment
Apr 10 08:28:52 UTC 2026	submitted	job id `304909` awaits release by job manager
Apr 10 08:29:47 UTC 2026	released	job awaits launch by Slurm scheduler
Apr 10 08:30:55 UTC 2026	running	job `304909` is running
Apr 10 11:16:01 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-304909.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-riscv64-generic-riscv-1775819588.tar.zst` size: 46 MiB (48893808 bytes) entries: 5318 modules under 2025.06-001/software/linux/riscv64/generic/modules/all `CMake/3.31.8-GCCcore-14.3.0.lua` `LAME/3.100-GCCcore-14.3.0.lua` `PLUMED/2.9.4-foss-2025b.lua` `Voro++/0.4.6-GCCcore-14.3.0.lua` `dav1d/1.5.2-GCCcore-14.3.0.lua` `ffnvcodec/13.0.19.0.lua` `kim-api/2.4.1-GCC-14.3.0.lua` `mpi4py/4.1.0-gompi-2025b.lua` `x264/20250831-GCCcore-14.3.0.lua` `x265/4.1-GCCcore-14.3.0.lua` `xxd/9.1.1775-GCCcore-14.3.0.lua` software under 2025.06-001/software/linux/riscv64/generic/software `CMake/3.31.8-GCCcore-14.3.0` `LAME/3.100-GCCcore-14.3.0` `PLUMED/2.9.4-foss-2025b` `Voro++/0.4.6-GCCcore-14.3.0` `dav1d/1.5.2-GCCcore-14.3.0` `ffnvcodec/13.0.19.0` `kim-api/2.4.1-GCC-14.3.0` `mpi4py/4.1.0-gompi-2025b` `x264/20250831-GCCcore-14.3.0` `x265/4.1-GCCcore-14.3.0` `xxd/9.1.1775-GCCcore-14.3.0` reprod directories under 2025.06-001/software/linux/riscv64/generic/reprod no reprod directories in tarball other under 2025.06-001/software/linux/riscv64/generic no other files in tarball
Apr 10 11:16:01 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job304909.test` does not exist in job directory, or parsing it failed.

julianmorillo · 2026-04-15T07:25:46Z

Let's tray again now that tbb (the cause of the error) is already installed.

julianmorillo · 2026-04-15T07:26:04Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-04-15T07:26:11Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.04/pr_52/305165

date	job status	comment
Apr 15 07:26:09 UTC 2026	submitted	job id `305165` awaits release by job manager
Apr 15 07:26:23 UTC 2026	released	job awaits launch by Slurm scheduler
Apr 15 07:27:32 UTC 2026	running	job `305165` is running
Apr 16 08:54:52 UTC 2026	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job305165.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Apr 16 08:54:52 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job305165.test` does not exist in job directory, or parsing it failed.

julianmorillo · 2026-04-16T08:53:30Z

It also depends on LLVM, cancelling it.

julianmorillo · 2026-04-22T07:25:44Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-04-22T07:25:51Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.04/pr_52/305591

date	job status	comment
Apr 22 07:25:49 UTC 2026	submitted	job id `305591` awaits release by job manager
Apr 22 07:26:27 UTC 2026	released	job awaits launch by Slurm scheduler
Apr 22 07:27:31 UTC 2026	running	job `305591` is running
Apr 22 15:23:11 UTC 2026	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job305591.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Apr 22 15:23:11 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job305591.test` does not exist in job directory, or parsing it failed.

julianmorillo · 2026-04-24T09:41:56Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-04-24T09:42:03Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.04/pr_52/305912

date	job status	comment
Apr 24 09:42:02 UTC 2026	submitted	job id `305912` awaits release by job manager
Apr 24 09:42:41 UTC 2026	released	job awaits launch by Slurm scheduler
Apr 24 10:05:05 UTC 2026	running	job `305912` is running
Apr 24 10:09:25 UTC 2026	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job305912.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Apr 24 10:09:25 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job305912.test` does not exist in job directory, or parsing it failed.

julianmorillo · 2026-04-28T08:50:56Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-04-28T08:51:03Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.04/pr_52/306500

date	job status	comment
Apr 28 08:51:01 UTC 2026	submitted	job id `306500` awaits release by job manager
Apr 28 08:51:59 UTC 2026	released	job awaits launch by Slurm scheduler
Apr 28 08:53:03 UTC 2026	running	job `306500` is running
Apr 29 19:09:06 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-306500.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-riscv64-generic-riscv-1777489118.tar.zst` size: 177 MiB (185950912 bytes) entries: 4617 modules under 2025.06-001/software/linux/riscv64/generic/modules/all `GObject-Introspection/1.84.0-GCCcore-14.3.0.lua` `Gdk-Pixbuf/2.42.12-GCCcore-14.3.0.lua` `HarfBuzz/11.4.1-GCCcore-14.3.0.lua` `JasPer/4.2.8-GCCcore-14.3.0.lua` `cairo/1.18.4-GCCcore-14.3.0.lua` `libheif/1.20.2-GCCcore-14.3.0.lua` `nodejs/22.17.1-GCCcore-14.3.0.lua` `pixman/0.46.4-GCCcore-14.3.0.lua` software under 2025.06-001/software/linux/riscv64/generic/software `GObject-Introspection/1.84.0-GCCcore-14.3.0` `Gdk-Pixbuf/2.42.12-GCCcore-14.3.0` `HarfBuzz/11.4.1-GCCcore-14.3.0` `JasPer/4.2.8-GCCcore-14.3.0` `cairo/1.18.4-GCCcore-14.3.0` `libheif/1.20.2-GCCcore-14.3.0` `nodejs/22.17.1-GCCcore-14.3.0` `pixman/0.46.4-GCCcore-14.3.0` reprod directories under 2025.06-001/software/linux/riscv64/generic/reprod no reprod directories in tarball other under 2025.06-001/software/linux/riscv64/generic no other files in tarball
Apr 29 19:09:06 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job306500.test` does not exist in job directory, or parsing it failed.

julianmorillo · 2026-05-07T14:36:24Z

bot: build repo:dev.eessi.io-riscv-2025.06-001 instance:eessi-bot-riscv for:arch=riscv64/generic

riscv-eessi-io-bot · 2026-05-07T14:36:31Z

New job on instance eessi-bot-riscv for repository dev.eessi.io-riscv-2025.06-001
Building on: generic
Building for: riscv64/generic
Job dir: /home/eessibot/shared/jobs/2026.05/pr_52/307904

date	job status	comment
May 07 14:36:29 UTC 2026	submitted	job id `307904` awaits release by job manager
May 07 14:36:52 UTC 2026	released	job awaits launch by Slurm scheduler
May 07 14:37:58 UTC 2026	running	job `307904` is running
May 08 07:44:05 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-307904.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-riscv64-generic-riscv-1778225721.tar.zst` size: 1 MiB (1911962 bytes) entries: 217 modules under 2025.06-001/software/linux/riscv64/generic/modules/all `Check/0.15.2-GCCcore-14.3.0.lua` `libevdev/1.13.6-GCCcore-14.3.0.lua` `libinput/1.30.1-GCCcore-14.3.0.lua` software under 2025.06-001/software/linux/riscv64/generic/software `Check/0.15.2-GCCcore-14.3.0` `libevdev/1.13.6-GCCcore-14.3.0` `libinput/1.30.1-GCCcore-14.3.0` reprod directories under 2025.06-001/software/linux/riscv64/generic/reprod no reprod directories in tarball other under 2025.06-001/software/linux/riscv64/generic no other files in tarball
May 08 07:44:05 UTC 2026	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job307904.test` does not exist in job directory, or parsing it failed.

julianmorillo · 2026-05-08T10:37:44Z

It depends on Qt6 and actually it is failing there:

* [FAILED]  Qt6/6.9.3-GCCcore-14.3.0

So whatever the problem is, this needs to wait for #102

{2025.06-001}[2025b] LAMMPS 22Jul2025

16fb7a4

julianmorillo added 2 commits February 25, 2026 11:04

Merge branch 'main' into LAMMPS

ea760b9

Rename LAMMPS entry in YAML configuration

980d44d

julianmorillo changed the title ~~{2025.06-001}[2025b] LAMMPS 22Jul2025~~ {2025.06-001}[2025b] LAMMPS 22Jul2025_update3 Feb 26, 2026

Merge branch 'main' into LAMMPS

5a09ca2

Uh oh!

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julianmorillo commented Feb 23, 2026

Uh oh!

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julianmorillo commented Mar 13, 2026

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