Merge pull request #1029 from trz42/2023.06-grace-2022b-eb492-apps

{2023.06}[2022b,grace] apps originally built with EB 4.9.2

Author: trz42

easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2022b.yml

@@ -87,7 +87,7 @@ easyconfigs:
 #      options:
 #        from-pr: 20238
   - R-4.2.2-foss-2022b.eb
-# from here on built originally with EB 4.9.0
+# from here on built originally with EB 4.9.1
 # originally built with EB 4.9.1, PR 20379 was included since 4.9.2; no more
 # updates to the easyconfig since then
 #  - R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb:
@@ -99,3 +99,58 @@ easyconfigs:
   - ASE-3.22.1-gfbf-2022b.eb
   - SEPP-4.5.1-foss-2022b.eb
   - Valgrind-3.21.0-gompi-2022b.eb
+# from here on built originally with EB 4.9.2
+  - BLAST+-2.14.0-gompi-2022b.eb
+# originally built with EB 4.9.2; PR 21136 included since EB 4.9.3
+#  - BioPerl-1.7.8-GCCcore-12.2.0.eb:
+#      options:
+#        # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21136
+#        from-commit: d8076ebaf8cb915762adebf88d385cc672b350dc
+  - BioPerl-1.7.8-GCCcore-12.2.0.eb
+  - gnuplot-5.4.6-GCCcore-12.2.0.eb
+  - h5py-3.8.0-foss-2022b.eb
+  - MDAnalysis-2.4.2-foss-2022b.eb
+  - ncbi-vdb-3.0.5-gompi-2022b.eb
+  - Bio-DB-HTS-3.01-GCC-12.2.0.eb
+  - MAFFT-7.505-GCC-12.2.0-with-extensions.eb
+  - MetaEuk-6-GCC-12.2.0.eb
+  - BamTools-2.5.2-GCC-12.2.0.eb
+  - Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb
+  - Mash-2.3-GCC-12.2.0.eb
+  - CapnProto-0.10.3-GCCcore-12.2.0.eb
+  - WhatsHap-2.1-foss-2022b.eb
+  - SAMtools-1.17-GCC-12.2.0.eb
+  - Bowtie2-2.5.1-GCC-12.2.0.eb
+  - CD-HIT-4.8.1-GCC-12.2.0.eb
+  - VCFtools-0.1.16-GCC-12.2.0.eb
+  - GenomeTools-1.6.2-GCC-12.2.0.eb
+  - Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb
+  - parallel-20230722-GCCcore-12.2.0.eb
+  - BCFtools-1.17-GCC-12.2.0.eb
+  - lpsolve-5.5.2.11-GCC-12.2.0.eb
+  - fastp-0.23.4-GCC-12.2.0.eb
+  - KronaTools-2.8.1-GCCcore-12.2.0.eb
+  - MultiQC-1.14-foss-2022b.eb
+  - CGAL-5.5.2-GCCcore-12.2.0.eb
+  - KaHIP-3.14-gompi-2022b.eb
+  - MPC-1.3.1-GCCcore-12.2.0.eb
+#  - MUMPS-5.6.1-foss-2022b-metis.eb
+#  - GL2PS-1.4.2-GCCcore-12.2.0.eb
+#  - GST-plugins-base-1.22.1-GCC-12.2.0.eb
+#  - wxWidgets-3.2.2.1-GCC-12.2.0.eb
+#  - Archive-Zip-1.68-GCCcore-12.2.0.eb
+#  - jemalloc-5.3.0-GCCcore-12.2.0.eb
+#  - Judy-1.0.5-GCCcore-12.2.0.eb
+#  - libaio-0.3.113-GCCcore-12.2.0.eb
+#  - Z3-4.12.2-GCCcore-12.2.0.eb
+#  - tbb-2021.10.0-GCCcore-12.2.0.eb
+#  - dask-2023.7.1-foss-2022b.eb
+#  - netcdf4-python-1.6.3-foss-2022b.eb
+#  - Ruby-3.2.2-GCCcore-12.2.0.eb
+## originally built with EB 4.9.2; PR 21526 and PR 3467 included since EB 5.0.0, thus need to use *from-commit
+#  - ROOT-6.26.10-foss-2022b.eb:
+#      options:
+#        # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21526
+#        from-commit: 6cbfbd7d7a55dc7243f46d0beea510278f4718df
+#        # see https://github.com/easybuilders/easybuild-easyblocks/pull/3467
+#        include-easyblocks-from-commit: c3aebe1f133d064a228c5d6c282e898b83d74601