Merge branch '2023.06-software.eessi.io' of ssh://github.com/EESSI/software-layer into eessi-2023.06-grace-apps-from-EB-4.9.4-easystack

Author: Richard Top

easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.8.2-2022b.yml

@@ -0,0 +1,5 @@
+easyconfigs:
+# from here on built originally with EB 4.8.2
+# need to keep building Qt5 with 4.8.2 because more recent versions include an
+# updated easyblock for python which doesn't work correctly for Python-2.7.18
+  - Qt5-5.15.7-GCCcore-12.2.0.eb

easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2022b.yml

@@ -30,5 +30,7 @@ easyconfigs:
 #      options:
 #        from-pr: 19339
   - HarfBuzz-5.3.1-GCCcore-12.2.0.eb
+# moved Qt5 to easystack file used with EB 4.8.2 because it needs an older
+# version of the python easyblock
 #  - Qt5-5.15.7-GCCcore-12.2.0.eb
 #  - QuantumESPRESSO-7.2-foss-2022b.eb

easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2023a.yml

@@ -92,7 +92,11 @@ easyconfigs:
   - GDAL-3.7.1-foss-2023a.eb
   - ncdu-1.18-GCC-12.3.0.eb
   - SAMtools-1.18-GCC-12.3.0.eb
-  - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb
+  - R-bundle-Bioconductor-3.18-foss-2023a-R-4.3.2.eb:
+      options:
+        # (additional extensions have been added)
+        # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21948
+        from-commit: f9cfe6ac7d9019970c2be3e8b09db4d846cf005a
   - ipympl-0.9.3-gfbf-2023a.eb
   - ESPResSo-4.2.2-foss-2023a.eb
   - GATK-4.5.0.0-GCCcore-12.3.0-Java-17.eb