Dev (#16)

* new example

* v=0.4.3

* inserted n_el 16 and 32 save dicts

* updated example scripts

* new example for converting measurement directorys to csv

* first implementation of npz to csv

* corrected plot angle

* fixed position error of measurement

* 0.4.4

* added logo

* deleted section

* new release of 0.4.2

* added 0.5.0

* linting

* appended ScioSpecMeasurementConfig

* update examples

* linting

* flake

* Update README.md

* updated docstring and resolved import error

* linting

* deleted old docs

* added excitation frequency

* Inserted exc_freq to dependent files.

* v==0.5.2

* prep for pytest publish

* pctr

* updated picture

* v==0.6.0

* changed logo

* Update README.md

* v==0.6.1

* Update README.md

* angle correction

* inserted daytime and temperature

* docstring and data format

* temperature visualization

* linting

* new visualization and black linting==23.1.0

* updated black==23.1.0

* pypitest==0.6.1.4

* pypi test == 0.6.1.5

* pypi test == 0.6.1.5

* v==0.6.2

* implemented visualization, not added to init

* linting

* linting#2

* linting #3

* meshing

* inserted citation cff

* added citation cff

* zenodo doi

* inserted absolute valued potential data

* Implemented mesh generation

* gitignore .vscode

* inserted raw string for fixing error.

* changed function names and inserted v computation

* linting

* docstring and function descriptions.

* linting

* skipping first measured value

* changed absolute label at potential matrix

* init. mesh for import

* first try to use pyvista

* pyvisa changes

* changed prepare for ml routine

* merge dev to 3d

* updated function

* added file in ignore

* modified configurations and added an example for 32 electrodes measurement

* modified burst count

* deleted prototyping functions.

* ignored .vsc settings

* updated reqs

* fixed npz to csv conversion error

* changed names of example measurements

* deleted unspecified measurement example.

* Adjusting the configurations

* Ready for test measurements using 32 electrodes.

* Inserted Issue marker in npz_to_csv.npz

* working example measurement scripts

* updated setup_m

* linting and ignore

* linting and updates

* new example script

* pypi test release

* new release v==0.6.4

* updated readme

* Updated Readme TDB

* preperations for Ethernet connection

* new pytest version and typos

* linting

* updated and undo some changes from pytest 0.6.4.7

* release==0.6.4.8

* channel group repeated bug resolved.

* Added further information, optimized the .gitignore.

* fixed current computation configuration bug.

Author: JacobTh98

.gitignore

@@ -4,7 +4,7 @@ dist/
 .eggs/
 sciopy.egg-info/
 .ipynb_checkpoints
-.ipynb
+*.ipynb
 developing.ipynb
 update_package.sh
 update_test_pypi.sh

examples/custom_measurement.py

@@ -21,12 +21,12 @@
     total_meas_num=10,
     n_el=16,
     channel_group=[1],
-    exc_freq=10_000,
+    exc_freq=10_000,  # 10,000Hz = 10kHz
     framerate=5,
-    amplitude=10,
+    amplitude=0.01,  # 0.01A = 10mA (maximum)
     inj_skip=0,
     gain=1,
-    adc_range=1,
+    adc_range=1,  # +/- 1V
     notes="None",
     configured=False,
 )

sciopy/configurations.py

@@ -61,9 +61,11 @@ def clTbt_dp(val: float) -> list:
     # Excitation amplitude double precision
     # A_min = 100nA
     # A_max = 10mA
-    if ssms.amplitude > 0.001:
-        print(f"Divide {ssms.amplitude}/1000. Out of available range")
-        ssms.amplitude = ssms.amplitude / 1000
+    if ssms.amplitude > 0.01:
+        print(
+            f"Amplitude {ssms.amplitude}A is out of available range.\nSet amplitude to 10mA."
+        )
+        ssms.amplitude = 0.01
     serial.write(
         bytearray(list(np.concatenate([[176, 9, 5], clTbt_dp(ssms.amplitude), [176]])))
     )

setup.py

@@ -2,7 +2,7 @@
 
 setuptools.setup(
     name="sciopy",
-    version="0.6.4.8",
+    version="0.6.4.9",
     author="Jacob Peter Thönes",
     author_email="jacob.thoenes@uni-rostock.de",
     description="Python based interface module for communication with the ScioSpec Electrical Impedance Tomography (EIT) device.",