EnviroMS/.github/workflows/di_workflow_tests.yaml at master · EMSL-Computing/EnviroMS · GitHub

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name: Test DI Workflow

on:
  push:
  workflow_dispatch:

jobs:
  run-miniwdl:
    runs-on: ubuntu-latest

    steps:
    - name: Checkout repository
      uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2

    - name: Set up Python
      uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
      with:
        python-version: '3.8'

    - name: Install Docker
      run: |
        curl -fsSL https://get.docker.com -o get-docker.sh
        sh get-docker.sh
        sudo usermod -aG docker $USER

    - name: Install MiniWDL
      run: |
        python -m pip install --upgrade pip
        pip install miniwdl

    - name: Build Docker Image
      run: |
        make docker-build-local

    - name: Run Bruker di WDL with local Docker Image based on Dockerfile
      run: |
        miniwdl run wdl/di_fticr_ms_bruker.wdl -i wdl/di_fticr_wdl_input_local_docker_bruker.json --verbose --no-cache --copy-input-files

    - name: Run Bruker di WDL with pushed Docker Image
      run: |
        make wdl-run-di-bruker

    - name: Run di WDL with local Docker Image based on Dockerfile
      run: |
        miniwdl run wdl/di_fticr_ms.wdl -i wdl/di_fticr_wdl_input_local_docker.json --verbose --no-cache --copy-input-files

    - name: Run di WDL with pushed Docker Image
      run: |
        make wdl-run-di