updated BVOC documentation#3909
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Added detailed information on the impact of drought on isoprene emissions, including mathematical formulations and references to recent studies.
This updates the description of the BVOC emissions model with the new drought impact and high-latitude isoprene emissions factors.
Describes new drought impact and high-latitude isoprene emissions parameterization
Added new references related for BVOC drought impact and high-latitude isoprene emissions
Fix for FATES year-boundary restart issue
Merge b4b-dev to master Details in PR ESCOMP#4000
slevis-lmwg
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@lkemmons thank you for your work in this section! My review is thorough, but mostly it involves adding links to the references when each one first appears. To make things easier, I will try committing the simple suggestions if github will allow me, and I will leave only a few issues for you to resolve. Thanks again.
Add links when references first appear and distinguish what's new in CLM5 versus CLM6
Remove "now" which made sense when this part was new
Add another reference link
One more reference link
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Correct my own typo
ctsm5.4.039: add new fates namelist switch for dbh init when nocomp is on
Co-authored-by: Samuel Levis <slevis@ucar.edu>
clarify equations.
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@lkemmons thank you. Now that you completed the revisions, I will attempt a |
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Oh... but to accomplish this I need collaborator permissions on your branch... Please click on Settings near the top, then "Collaborators and Teams", and then follow instructions on adding me (slevis-lmwg) as collaborator. |
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I added you to my repo.
…On Tue, May 19, 2026 at 12:31 PM Samuel Levis ***@***.***> wrote:
*slevis-lmwg* left a comment (ESCOMP/CTSM#3909)
<#3909 (comment)>
For me it appears to be at the top of this page, i.e. the PR's page.
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Thanks!!!
…On Tue, May 19, 2026 at 1:15 PM Samuel Levis ***@***.***> wrote:
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------------------------------
In doc/source/tech_note/BVOCs/CLM50_Tech_Note_BVOCs.rst
<#3909 (comment)>:
> + E_{opt\_bbds} = 7.9 e^{0.22 (T_{24}-297.15)}
+
+where :math:`T_{24}` denotes the mean air temperature of the preceding day (Wang et al., 2024a).
+For C3AG, the isoprene emission factor responds over a longer timescale of 10 days (Wang et al., 2024b) and is parameterized as a function of the mean air temperature over the preceding 10 days (:math:`T_{240}`):
+
+.. math::
+ 🏷️ C3 arctic grass adjustment factor
+
+ E_{opt\_C3AG} = e^{0.22 (T_{240}-288.15)}
+
+In addition, a dynamic temperature response curve for C3AG depends on recent temperature history as:
+
+.. math::
+ 🏷️ C3 arctic grass leaf temperature factor
+
+ \gamma_{T\_C3AG} = E_{opt\_C3AG} e^{(C_{C3AG}/R (1/303.15 - 1/T_{leaf}))}
Thank you. I also rearranged the "/ R" using the code as my guide. The
equation ends up the same. I just find it easier to interpret this way. I
will push the change in a moment.
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slevis-lmwg
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This looks ready to me.
Description of changes
Updated BVOC documentation
Specific notes
Contributors other than yourself, if any:
Input provided by Hui Wang (UC-Irvine), @HuiWangWanderInGitHub
CTSM Issues Fixed (include github issue #):
#3876 (comment)
Are answers expected to change (and if so in what way)?
Any User Interface Changes (namelist or namelist defaults changes)?
Does this create a need to change or add documentation? Did you do so?
Testing performed, if any:
(List what testing you did to show your changes worked as expected)
(This can be manual testing or running of the different test suites)
(Documentation on system testing is here: https://github.com/ESCOMP/ctsm/wiki/System-Testing-Guide)
(aux_clm on derecho for intel/gnu and izumi for intel/gnu/nag/nvhpc is the standard for tags on master)
NOTE: Be sure to check your coding style against the standard
(https://github.com/ESCOMP/ctsm/wiki/CTSM-coding-guidelines) and review
the list of common problems to watch out for
(https://github.com/ESCOMP/CTSM/wiki/List-of-common-problems).