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Update bgc spinup section#3998

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slevis-lmwg wants to merge 23 commits into
ESCOMP:b4b-devfrom
slevis-lmwg:bgcspinups_sec1.5.7
Open

Update bgc spinup section#3998
slevis-lmwg wants to merge 23 commits into
ESCOMP:b4b-devfrom
slevis-lmwg:bgcspinups_sec1.5.7

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@slevis-lmwg slevis-lmwg commented May 6, 2026

Description of changes

Start with the issue #3975

Specific notes

Contributors other than yourself, if any:

CTSM Issues Fixed (include github issue #):
Resolves #3975

Are answers expected to change (and if so in what way)? No

Any User Interface Changes (namelist or namelist defaults changes)? No

Does this create a need to change or add documentation? Did you do so?
This PR updates documentation.

@slevis-lmwg slevis-lmwg self-assigned this May 6, 2026
@slevis-lmwg slevis-lmwg added b4b bit-for-bit docs-loc:users-guide Relates to User's Guide (using CTSM/tools) labels May 6, 2026
@github-project-automation github-project-automation Bot moved this to Ready to start (or start again) in CTSM: Upcoming tags May 6, 2026
@slevis-lmwg slevis-lmwg moved this to In Progress in CLM documentation May 6, 2026
@slevis-lmwg slevis-lmwg moved this from Ready to start (or start again) to In progress - b4b-dev in CTSM: Upcoming tags May 6, 2026
@slevis-lmwg slevis-lmwg moved this from Todo to In Progress in LMWG: Sprint Planning Board May 6, 2026
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@slevis-lmwg slevis-lmwg moved this from In Progress to In review in CLM documentation May 7, 2026
@slevis-lmwg slevis-lmwg moved this from In review to In Progress in CLM documentation May 7, 2026
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@slevis-lmwg slevis-lmwg marked this pull request as ready for review May 14, 2026 00:03
@slevis-lmwg slevis-lmwg requested a review from olyson May 14, 2026 00:03
@slevis-lmwg slevis-lmwg moved this from In Progress to In review in CLM documentation May 14, 2026
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@olyson could you review the spinup section that comes right after yours? I tried to simplify this section relative to the clm5 version since now there's the extra step of SASU.

@slevis-lmwg slevis-lmwg linked an issue May 14, 2026 that may be closed by this pull request
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Looks pretty good, thanks. Some comments on things that were probably there before regarding the case workflow that need fixing. I'm doing short runs of the sequence to make sure everything works, but submitting this review now so you can take a look.

@github-project-automation github-project-automation Bot moved this from In progress - b4b-dev to Stalled (needs review, blocked etc.) in CTSM: Upcoming tags May 14, 2026
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Thank you @olyson, and I'm sorry that you discovered so many unaddressed issues. I have included your recommendations (except for changing Sp to SP, though I'm open to discussing it), and I will take responsibility for rerunning the examples to confirm that they work with my updates.

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b4b bit-for-bit docs-loc:users-guide Relates to User's Guide (using CTSM/tools)

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User's Guide update: Section 1.5.7 BgcCrop spin-ups

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