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Sync skills and version from elnora-cli v1.4.0
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‎.claude-plugin/marketplace.json‎

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"url": "https://elnora.ai"
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},
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"metadata": {
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"version": "1.3.5",
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"version": "1.4.0",
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"description": "AI-powered bioprotocol generation and lab workflow management plugins"
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},
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"plugins": [

‎elnora/.claude-plugin/plugin.json‎

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{
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"name": "elnora",
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"version": "1.3.5",
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"version": "1.4.0",
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"description": "AI-powered bioprotocol generation and lab workflow management. Connect to the Elnora AI Platform to generate, optimize, and manage bioprotocols for wet-lab experiments.",
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"author": {
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"name": "Elnora AI",

‎elnora/skills/elnora-admin/SKILL.md‎

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---
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name: elnora-admin
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description: >
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This skill should be used when the user asks to "log in", "check auth", "create API key",
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"revoke API key", "check health", "submit feedback", "view audit log",
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"shell completions", "account details", "accept terms", "validate token", "elnora setup",
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"api key policy", "delete account", "list users", "feature flags", "legal documents",
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"set feature flag", "manage legal docs", "list profiles", "show profiles", "whoami",
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"run diagnostics", "open platform",
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This skill should be used when the user asks to "log in", "logout", "check auth",
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"create API key", "revoke API key", "list API keys", "check health", "submit feedback",
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"view audit log", "shell completions", "get account", "update account", "account details",
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"view agreements", "accept terms", "validate token", "elnora setup", "api key policy",
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"delete account", "list users", "feature flags", "legal documents", "set feature flag",
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"manage legal docs", "list profiles", "show profiles", "whoami", "run diagnostics",
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"open platform",
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or any task involving Elnora Platform authentication, administration, or diagnostics.
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---
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@@ -16,20 +17,24 @@ Authentication, API key management, account settings, health checks, audit logs,
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## Tool Access
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Elnora is a **command-line tool**. Run commands via your Bash/Shell tool.
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Elnora is available via two methods. Use whichever is configured.
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- **Command:** `elnora`
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- **Verify:** `elnora --version`
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- **If not found:** tell the user to install it. Detect their platform:
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- macOS/Linux: `curl -fsSL https://cli.elnora.ai/install.sh | bash`
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- Windows (PowerShell): `irm https://cli.elnora.ai/install.ps1 | iex`
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- Any platform with Node.js: `npm install -g @elnora-ai/cli`
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**Option A — CLI via Bash (preferred)**
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**CLI is the recommended path** — it uses fewer tokens, is more reliable, and the commands below are ready to copy-paste.
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Run commands via your Bash/Shell tool as `elnora <group> <action> ...`. Verify with `elnora --version`. CLI uses ~5× fewer tokens than MCP.
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If MCP tools prefixed `mcp__elnora__` are available in your tool list, they work too — use whichever the user prefers or whichever is already configured in your environment.
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**Option B — MCP tools (when CLI isn't installed)**
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**Never fabricate function names** like `elnora_generate_protocol`. All valid commands are listed under "Commands" in this skill.
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Look for tools prefixed `mcp__elnora__` in your available tools. Call them with structured parameters (camelCase — e.g. `projectId`, not `project-id`). See the "MCP Tool Names" table below for the mapping.
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**If neither is available, tell the user to install one:**
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- CLI: `curl -fsSL https://cli.elnora.ai/install.sh | bash` (macOS/Linux)
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or `irm https://cli.elnora.ai/install.ps1 | iex` (Windows)
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- MCP: `claude mcp add elnora --transport http --scope user https://mcp.elnora.ai/mcp`
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then `/mcp` to authenticate.
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**Never fabricate tool names.** Valid commands are in the Commands section; their MCP equivalents are in the MCP Tool Names table.
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## Invocation
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$CLI doctor
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```
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Runs diagnostic checks: API reachability, authentication, version currency, config permissions, AI server reachability.
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Runs 10 diagnostic checks across three sections: **CLI** (API reachability, authentication, version currency, config permissions, AI server reachability, PATH configured), **Claude Code** (plugin enabled, skills installed, plugin version match), and **MCP** (server reachable). Each check reports pass / fail / warn / skip; the summary line shows the tally.
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### Open Platform
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@@ -301,6 +306,40 @@ elnora completion zsh >> ~/.zshrc
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elnora completion fish > ~/.config/fish/completions/elnora.fish
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```
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## MCP Tool Names
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All commands in this skill are auto-registered as MCP tools. The mapping is `elnora <group> <action>` → `elnora_<group>_<action>` (camelCase preserved; only dots are replaced with underscores).
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| CLI command | MCP tool name |
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|-------------|---------------|
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| `auth login` | `elnora_auth_login` |
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| `auth logout` | `elnora_auth_logout` |
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| `auth status` | `elnora_auth_status` |
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| `auth profiles` | `elnora_auth_profiles` |
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| `auth validate` | `elnora_auth_validate` |
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| `api-keys create` | `elnora_api-keys_create` |
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| `api-keys list` | `elnora_api-keys_list` |
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| `api-keys revoke` | `elnora_api-keys_revoke` |
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| `api-keys get-policy` | `elnora_api-keys_getPolicy` |
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| `api-keys set-policy` | `elnora_api-keys_setPolicy` |
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| `account get` | `elnora_account_get` |
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| `account update` | `elnora_account_update` |
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| `account agreements` | `elnora_account_agreements` |
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| `account accept-terms` | `elnora_account_acceptTerms` |
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| `account add-legal-doc` | `elnora_account_addLegalDoc` |
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| `account update-legal-doc` | `elnora_account_updateLegalDoc` |
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| `account delete-legal-doc` | `elnora_account_deleteLegalDoc` |
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| `account delete` | `elnora_account_delete` |
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| `account users` | `elnora_account_users` |
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| `flags list` | `elnora_flags_list` |
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| `flags get` | `elnora_flags_get` |
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| `flags set` | `elnora_flags_set` |
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| `audit list` | `elnora_audit_list` |
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| `feedback submit` | `elnora_feedback_submit` |
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| `health check` | `elnora_health_check` |
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Note: `whoami`, `doctor`, `open`, `completion`, `update`, and `setup` are CLI-only — no MCP equivalents.
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## Agent Recipes
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**Verify setup:**

‎elnora/skills/elnora-agent/SKILL.md‎

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name: elnora-agent
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description: >
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This skill should be used when the user asks about "Elnora agent capabilities",
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"what can the agent do", "agent tools", "web search", "academic search",
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"PubMed", "ArXiv", "Exa", "Tavily", "Perplexity", "Valyu", "ToolUniverse",
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"scientific tools", "agent memory", "code execution", "sandbox",
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"search papers", "search literature", "drug discovery", "protein analysis",
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"clinical trials", "file operations", "agent skills",
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"what can the agent do", "what tools does Elnora have", "what can Elnora do",
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"agent tools", "web search", "academic search", "PubMed", "ArXiv", "Exa",
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"Tavily", "Perplexity", "Valyu", "ToolUniverse", "scientific tools",
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"agent memory", "code execution", "sandbox", "search papers", "search literature",
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"drug discovery", "protein analysis", "clinical trials", "file operations",
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"agent skills",
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or any question about what the Elnora AI Agent can do when you send it a task.
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---
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## Tool Access
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Elnora is a **command-line tool**. Run commands via your Bash/Shell tool.
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This skill documents **what the Elnora Agent can do**. It does not have dedicated CLI commands — interact with the agent through the `elnora-tasks` skill.
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- **Command:** `elnora`
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- **Verify:** `elnora --version`
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- **If not found:** tell the user to install it. Detect their platform:
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- macOS/Linux: `curl -fsSL https://cli.elnora.ai/install.sh | bash`
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- Windows (PowerShell): `irm https://cli.elnora.ai/install.ps1 | iex`
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- Any platform with Node.js: `npm install -g @elnora-ai/cli`
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Elnora is available via two methods. Use whichever is configured.
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**CLI is the recommended path** — it uses fewer tokens, is more reliable, and the commands below are ready to copy-paste.
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**Option A — CLI via Bash (preferred)**
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If MCP tools prefixed `mcp__elnora__` are available in your tool list, they work too — use whichever the user prefers or whichever is already configured in your environment.
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Run commands via your Bash/Shell tool as `elnora tasks create ...` or `elnora tasks send ...`. Verify with `elnora --version`.
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**Never fabricate function names** like `elnora_generate_protocol`. All valid commands are listed under "Commands" in this skill.
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**Tip:** Add `--stream` for real-time agent output:
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elnora --compact tasks send <TASK_ID> --message "..." --stream
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**Option B — MCP tools (when CLI isn't installed)**
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Look for tools prefixed `mcp__elnora__` in your available tools — specifically `mcp__elnora__elnora_tasks_create` and `mcp__elnora__elnora_tasks_send`. Call them with structured parameters (camelCase).
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**If neither is available, tell the user to install one:**
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- CLI: `curl -fsSL https://cli.elnora.ai/install.sh | bash` (macOS/Linux)
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or `irm https://cli.elnora.ai/install.ps1 | iex` (Windows)
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- MCP: `claude mcp add elnora --transport http --scope user https://mcp.elnora.ai/mcp`
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then `/mcp` to authenticate.
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**Never fabricate tool names** like `elnora_generate_protocol`. The agent is interacted with via `tasks.create` and `tasks.send` only — see the `elnora-tasks` skill for full command reference.
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## Invocation
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‎elnora/skills/elnora-files/SKILL.md‎

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This skill should be used when the user asks to "list files", "read a file",
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"get file content", "view protocol output", "file versions", "version history",
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"download protocol", "upload file", "upload batch", "bulk upload", "create file",
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"archive file", "fork file", "promote file", "working copy", "restore version",
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"search file content", or any task involving Elnora Platform file management.
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"archive file", "fork file", "promote file", "working copy", "commit working copy",
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"update file", "restore version",
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or any task involving Elnora Platform file management.
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NOT for searching file contents across files — use elnora-search for that.
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---
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# Elnora Files
@@ -14,20 +16,24 @@ Browse, read, create, upload, version, and manage files on the Elnora AI Platfor
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## Tool Access
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Elnora is a **command-line tool**. Run commands via your Bash/Shell tool.
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Elnora is available via two methods. Use whichever is configured.
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- **Command:** `elnora`
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- **Verify:** `elnora --version`
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- **If not found:** tell the user to install it. Detect their platform:
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- macOS/Linux: `curl -fsSL https://cli.elnora.ai/install.sh | bash`
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- Windows (PowerShell): `irm https://cli.elnora.ai/install.ps1 | iex`
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- Any platform with Node.js: `npm install -g @elnora-ai/cli`
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**Option A — CLI via Bash (preferred)**
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**CLI is the recommended path** — it uses fewer tokens, is more reliable, and the commands below are ready to copy-paste.
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Run commands via your Bash/Shell tool as `elnora <group> <action> ...`. Verify with `elnora --version`. CLI uses ~5× fewer tokens than MCP.
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If MCP tools prefixed `mcp__elnora__` are available in your tool list, they work too — use whichever the user prefers or whichever is already configured in your environment.
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**Option B — MCP tools (when CLI isn't installed)**
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**Never fabricate function names** like `elnora_generate_protocol`. All valid commands are listed under "Commands" in this skill.
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Look for tools prefixed `mcp__elnora__` in your available tools. Call them with structured parameters (camelCase — e.g. `projectId`, not `project-id`). See the "MCP Tool Names" table below for the mapping.
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**If neither is available, tell the user to install one:**
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- CLI: `curl -fsSL https://cli.elnora.ai/install.sh | bash` (macOS/Linux)
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or `irm https://cli.elnora.ai/install.ps1 | iex` (Windows)
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- MCP: `claude mcp add elnora --transport http --scope user https://mcp.elnora.ai/mcp`
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then `/mcp` to authenticate.
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**Never fabricate tool names.** Valid commands are in the Commands section; their MCP equivalents are in the MCP Tool Names table.
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## Invocation
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| `--page` | No | Page number (default 1) |
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| `--page-size` | No | Results per page (default 25, max 100) |
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## MCP Tool Names
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| CLI command | MCP tool name |
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|-------------|---------------|
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| `files list` | `elnora_files_list` |
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| `files get` | `elnora_files_get` |
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| `files content` | `elnora_files_content` |
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| `files download` | `elnora_files_download` |
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| `files versions` | `elnora_files_versions` |
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| `files version-content` | `elnora_files_versionContent` |
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| `files create-version` | `elnora_files_createVersion` |
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| `files restore` | `elnora_files_restore` |
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| `files create` | `elnora_files_create` |
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| `files upload` | `elnora_files_upload` |
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| `files upload-batch` | `elnora_files_uploadBatch` |
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| `files confirm-upload` | `elnora_files_confirmUpload` |
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| `files update` | `elnora_files_update` |
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| `files archive` | `elnora_files_archive` |
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| `files promote` | `elnora_files_promote` |
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| `files fork` | `elnora_files_fork` |
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| `files working-copy` | `elnora_files_workingCopy` |
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| `files commit` | `elnora_files_commit` |
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| `files search-content` | `elnora_files_searchContent` |
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## Agent Recipes
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**Read a protocol from a project:**

‎elnora/skills/elnora-folders/SKILL.md‎

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## Tool Access
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Elnora is a **command-line tool**. Run commands via your Bash/Shell tool.
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Elnora is available via two methods. Use whichever is configured.
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- **Command:** `elnora`
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- **Verify:** `elnora --version`
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- **If not found:** tell the user to install it. Detect their platform:
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- macOS/Linux: `curl -fsSL https://cli.elnora.ai/install.sh | bash`
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- Windows (PowerShell): `irm https://cli.elnora.ai/install.ps1 | iex`
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- Any platform with Node.js: `npm install -g @elnora-ai/cli`
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**Option A — CLI via Bash (preferred)**
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**CLI is the recommended path** — it uses fewer tokens, is more reliable, and the commands below are ready to copy-paste.
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Run commands via your Bash/Shell tool as `elnora <group> <action> ...`. Verify with `elnora --version`. CLI uses ~5× fewer tokens than MCP.
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If MCP tools prefixed `mcp__elnora__` are available in your tool list, they work too — use whichever the user prefers or whichever is already configured in your environment.
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**Option B — MCP tools (when CLI isn't installed)**
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**Never fabricate function names** like `elnora_generate_protocol`. All valid commands are listed under "Commands" in this skill.
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Look for tools prefixed `mcp__elnora__` in your available tools. Call them with structured parameters (camelCase — e.g. `projectId`, not `project-id`). See the "MCP Tool Names" table below for the mapping.
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**If neither is available, tell the user to install one:**
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- CLI: `curl -fsSL https://cli.elnora.ai/install.sh | bash` (macOS/Linux)
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or `irm https://cli.elnora.ai/install.ps1 | iex` (Windows)
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- MCP: `claude mcp add elnora --transport http --scope user https://mcp.elnora.ai/mcp`
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then `/mcp` to authenticate.
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**Never fabricate tool names.** Valid commands are in the Commands section; their MCP equivalents are in the MCP Tool Names table.
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## Invocation
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Destructive — confirm with user before running.
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## MCP Tool Names
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| CLI command | MCP tool name |
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|-------------|---------------|
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| `folders list` | `elnora_folders_list` |
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| `folders create` | `elnora_folders_create` |
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| `folders rename` | `elnora_folders_rename` |
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| `folders move` | `elnora_folders_move` |
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| `folders delete` | `elnora_folders_delete` |
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## Agent Recipes
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**Set up folder structure for a new project:**

‎elnora/skills/elnora-orgs/SKILL.md‎

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name: elnora-orgs
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description: >
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This skill should be used when the user asks to "list organizations", "create org",
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"org members", "billing", "invite member", "manage invitations", "resend invitation",
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"reinvite", "organization library", "shared library", "library files", "library folders",
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"set default org", "delete org", "list all orgs", "set stripe",
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"org members", "billing", "invite member", "manage invitations", "list invitations",
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"resend invitation", "reinvite", "cancel invitation", "accept invitation",
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"get invitation info", "remove member from org", "organization library",
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"shared library", "library files", "library folders", "set default org",
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"delete org", "list all orgs", "set stripe",
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or any task involving Elnora Platform organization management and shared library resources.
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---
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## Tool Access
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Elnora is a **command-line tool**. Run commands via your Bash/Shell tool.
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Elnora is available via two methods. Use whichever is configured.
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- **Command:** `elnora`
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- **Verify:** `elnora --version`
21-
- **If not found:** tell the user to install it. Detect their platform:
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- macOS/Linux: `curl -fsSL https://cli.elnora.ai/install.sh | bash`
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- Windows (PowerShell): `irm https://cli.elnora.ai/install.ps1 | iex`
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- Any platform with Node.js: `npm install -g @elnora-ai/cli`
21+
**Option A — CLI via Bash (preferred)**
2522

26-
**CLI is the recommended path** — it uses fewer tokens, is more reliable, and the commands below are ready to copy-paste.
23+
Run commands via your Bash/Shell tool as `elnora <group> <action> ...`. Verify with `elnora --version`. CLI uses ~5× fewer tokens than MCP.
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28-
If MCP tools prefixed `mcp__elnora__` are available in your tool list, they work too — use whichever the user prefers or whichever is already configured in your environment.
25+
**Option B — MCP tools (when CLI isn't installed)**
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30-
**Never fabricate function names** like `elnora_generate_protocol`. All valid commands are listed under "Commands" in this skill.
27+
Look for tools prefixed `mcp__elnora__` in your available tools. Call them with structured parameters (camelCase — e.g. `projectId`, not `project-id`). See the "MCP Tool Names" table below for the mapping.
28+
29+
**If neither is available, tell the user to install one:**
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31+
- CLI: `curl -fsSL https://cli.elnora.ai/install.sh | bash` (macOS/Linux)
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or `irm https://cli.elnora.ai/install.ps1 | iex` (Windows)
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- MCP: `claude mcp add elnora --transport http --scope user https://mcp.elnora.ai/mcp`
34+
then `/mcp` to authenticate.
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**Never fabricate tool names.** Valid commands are in the Commands section; their MCP equivalents are in the MCP Tool Names table.
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## Invocation
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@@ -237,6 +243,35 @@ $CLI --compact library delete-folder --org <ORG_ID> <FOLDER_ID>
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238244
Destructive — confirm with user first.
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## MCP Tool Names
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| CLI command | MCP tool name |
249+
|-------------|---------------|
250+
| `orgs list` | `elnora_orgs_list` |
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| `orgs get` | `elnora_orgs_get` |
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| `orgs create` | `elnora_orgs_create` |
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| `orgs update` | `elnora_orgs_update` |
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| `orgs members` | `elnora_orgs_members` |
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| `orgs update-role` | `elnora_orgs_updateRole` |
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| `orgs remove-member` | `elnora_orgs_removeMember` |
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| `orgs billing` | `elnora_orgs_billing` |
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| `orgs files` | `elnora_orgs_files` |
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| `orgs set-default` | `elnora_orgs_setDefault` |
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| `orgs set-stripe` | `elnora_orgs_setStripe` |
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| `orgs list-all` | `elnora_orgs_listAll` |
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| `orgs delete` | `elnora_orgs_delete` |
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| `orgs invite` | `elnora_orgs_invite` |
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| `orgs invitations` | `elnora_orgs_invitations` |
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| `orgs resend-invite` | `elnora_orgs_resendInvite` |
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| `orgs cancel-invite` | `elnora_orgs_cancelInvite` |
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| `orgs invitation-info` | `elnora_orgs_invitationInfo` |
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| `orgs accept-invite` | `elnora_orgs_acceptInvite` |
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| `library files` | `elnora_library_files` |
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| `library folders` | `elnora_library_folders` |
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| `library create-folder` | `elnora_library_createFolder` |
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| `library rename-folder` | `elnora_library_renameFolder` |
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| `library delete-folder` | `elnora_library_deleteFolder` |
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## Agent Recipes
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242277
**Get org ID, then check billing:**

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