Sync skills and version from elnora-cli v2.5.0

Author: elnora-bot

.claude-plugin/marketplace.json

@@ -6,7 +6,7 @@
     "url": "https://elnora.ai"
   },
   "metadata": {
-    "version": "2.4.0",
+    "version": "2.5.0",
     "description": "AI-powered bioprotocol generation and lab workflow management plugins"
   },
   "plugins": [

elnora/.claude-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "elnora",
-  "version": "2.4.0",
+  "version": "2.5.0",
   "description": "AI-powered bioprotocol generation and lab workflow management. Connect to the Elnora AI Platform to generate, optimize, and manage bioprotocols for wet-lab experiments.",
   "author": {
     "name": "Elnora AI",

elnora/skills/elnora-folders/SKILL.md

@@ -57,51 +57,60 @@ CLI="elnora"
 
 ## Commands
 
-### List Folders
-
-```bash
-$CLI --compact folders list <PROJECT_ID>
-```
-
-`<PROJECT_ID>` is positional (`projectId`). Returns the folder tree for the project.
+> **Knowledge Base by default.** `create` / `rename` / `move` / `delete` operate on the
+> Knowledge Base (the current folder model — same tree as `folders roots`/`children`). The
+> old project-scoped folders are legacy; reach them with `--project` (create) or `--legacy`
+> (rename/move/delete).
 
 ### Create Folder
 
 ```bash
-$CLI --compact folders create <PROJECT_ID> --name "Experiments"
-$CLI --compact folders create <PROJECT_ID> --name "Sub Folder" --parent-id <PARENT_FOLDER_ID>
+$CLI --compact folders create --name "Experiments"
+$CLI --compact folders create --name "Sub Folder" --parent-id <PARENT_FOLDER_ID>
+$CLI --compact folders create --name "Legacy" --project <PROJECT_ID>   # legacy project folder
 ```
 
 | Flag/Arg | Required | Notes |
 |----------|----------|-------|
-| `<PROJECT_ID>` | Yes | Positional — project UUID |
 | `--name` | Yes | Folder name |
-| `--parent-id` | No | Parent folder UUID for nesting (optional, so it's a flag) |
+| `--parent-id` | No | Parent folder UUID for nesting |
+| `--project` | No | Legacy: create a project-scoped folder in this project instead |
 
 ### Rename Folder
 
 ```bash
 $CLI --compact folders rename <FOLDER_ID> --name "New Name"
+$CLI --compact folders rename <FOLDER_ID> --name "New Name" --legacy   # a legacy project folder
 ```
 
 ### Move Folder
 
 ```bash
 $CLI --compact folders move <FOLDER_ID> <NEW_PARENT_ID>
 $CLI --compact folders move <FOLDER_ID> root
+$CLI --compact folders move <FOLDER_ID> <NEW_PARENT_ID> --legacy
 ```
 
-Both `<FOLDER_ID>` and `<NEW_PARENT_ID>` are positional (`folderId` and `parentId`). Use `root` to move to the project root level.
+Both `<FOLDER_ID>` and `<NEW_PARENT_ID>` are positional (`folderId` and `parentId`). Use `root` to move to the top level.
 
 ### Delete Folder
 
 ```bash
-$CLI --compact folders delete <FOLDER_ID>
-# -> {"deleted":true,"folderId":"<UUID>"}
+$CLI --compact folders delete <FOLDER_ID>            # KB: archives the folder
+# -> {"archived":true,"folderId":"<UUID>"}
+$CLI --compact folders delete <FOLDER_ID> --legacy   # legacy: hard-deletes a project folder
 ```
 
 Destructive — confirm with user before running.
 
+### List Folders (legacy)
+
+```bash
+$CLI --compact folders list <PROJECT_ID>
+```
+
+Legacy project-scoped folder tree. `<PROJECT_ID>` is positional. For the Knowledge Base, browse with `folders roots` / `folders children` instead.
+
 ### Share a Folder
 
 ```bash
@@ -137,18 +146,19 @@ $CLI --compact folders unshare <FOLDER_ID> <ACE_ID>  # revoke one share
 
 ## Agent Recipes
 
-**Set up folder structure for a new project:**
+**Set up a Knowledge Base folder structure:**
 
 ```bash
-PROJECT="<PROJECT_ID>"
-$CLI --compact folders create "$PROJECT" --name "Protocols"
-$CLI --compact folders create "$PROJECT" --name "Data"
-$CLI --compact folders create "$PROJECT" --name "Reports"
+$CLI --compact folders create --name "Protocols"
+$CLI --compact folders create --name "Data"
+$CLI --compact folders create --name "Reports"
+# nest one under another with --parent-id <FOLDER_ID>
 ```
 
 **Move a file into a folder:**
 
 ```bash
-$CLI --compact folders list <PROJECT_ID>
-$CLI --compact files update <FILE_ID> --folder <FOLDER_ID>
+$CLI --compact folders roots                 # find the folder to move into
+$CLI --compact folders children <FOLDER_ID>
+$CLI --compact files move <FILE_ID> <FOLDER_ID>
 ```

elnora/skills/elnora-orgs/SKILL.md

@@ -123,6 +123,15 @@ Look up fellow organization members by name or email substring — this is how y
 $CLI --compact orgs set-default <ORG_ID>
 ```
 
+### Set Knowledge Base Auto-Tidy
+
+```bash
+$CLI --compact orgs set-autotidy <ORG_ID> --enabled   # turn on
+$CLI --compact orgs set-autotidy <ORG_ID>             # turn off (omit --enabled)
+```
+
+Toggles KB auto-tidy for the org. When on, the agent proposes folder/file tidy-ups that land in the review queue (see the `elnora-review` skill).
+
 ### Set Stripe Customer ID (SystemAdmin)
 
 ```bash
@@ -265,6 +274,7 @@ Destructive — confirm with user first.
 | `orgs billing` | `elnora_orgs_billing` |
 | `orgs files` | `elnora_orgs_files` |
 | `orgs directory` | `elnora_orgs_directory` |
+| `orgs set-autotidy` | `elnora_orgs_setAutotidy` |
 | `orgs set-default` | `elnora_orgs_setDefault` |
 | `orgs set-stripe` | `elnora_orgs_setStripe` |
 | `orgs list-all` | `elnora_orgs_listAll` |

elnora/skills/elnora-tasks/SKILL.md

@@ -89,11 +89,13 @@ $CLI --compact --fields "id,name" projects list
 
 ```bash
 $CLI --compact tasks list
+$CLI --compact tasks list --status archived     # only archived tasks
+$CLI --compact tasks list --status all
 $CLI --compact tasks list --project <PROJECT_ID>
 $CLI --compact tasks list --project <PROJECT_ID> --page 2 --page-size 50
 ```
 
-Pagination: `--page` (default 1), `--page-size` (default 25, max 100).
+`--status` is `active` (default — hides archived), `archived`, or `all`. Pagination: `--page` (default 1), `--page-size` (default 25, max 100).
 
 Response:
 
@@ -175,14 +177,23 @@ $CLI --compact tasks update <TASK_ID> --status completed
 
 Must provide at least one of `--title` or `--status`.
 
-### Archive Task
+### Archive / Unarchive Task
 
 ```bash
 $CLI --compact tasks archive <TASK_ID>
 # -> {"archived":true,"taskId":"<UUID>"}
+$CLI --compact tasks unarchive <TASK_ID>
+# -> {"unarchived":true,"taskId":"<UUID>"}
 ```
 
-Destructive — confirm with user before running.
+Archive is destructive-ish (hides the task) — confirm with user. Archived tasks are found with `tasks list --status archived` and restored with `tasks unarchive`.
+
+### Task Attachments
+
+```bash
+$CLI --compact tasks attachments <TASK_ID>                        # list attached files
+$CLI --compact tasks attachment-content <TASK_ID> <ATTACHMENT_ID>  # read one attachment
+```
 
 ## MCP Tool Names
 
@@ -197,6 +208,9 @@ All commands are auto-registered as MCP tools with the `elnora_` prefix:
 | `tasks messages` | `elnora_tasks_messages` |
 | `tasks update` | `elnora_tasks_update` |
 | `tasks archive` | `elnora_tasks_archive` |
+| `tasks unarchive` | `elnora_tasks_unarchive` |
+| `tasks attachments` | `elnora_tasks_attachments` |
+| `tasks attachment-content` | `elnora_tasks_attachmentContent` |
 
 MCP tools accept the same parameters as CLI flags (camelCase). `elnora_tasks_send` always waits for the full agent response.