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Add has_homology field to the search dump #201

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Add has_homology field to the search dump #201

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7 changes: 7 additions & 0 deletions src/ensembl/production/metadata/api/search/search.py
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Original file line number Diff line number Diff line change
Expand Up @@ -156,6 +156,7 @@ class GenomeSearchDocument(BaseModel):
coding_genes: int
has_variation: bool = False
has_regulation: bool = False
has_homology: bool = False
genebuild_provider: str
genebuild_method_display: str

Expand Down Expand Up @@ -188,6 +189,7 @@ def to_search_entry(self) -> SearchEntry:
SearchField(name="n50", value=str(self.contig_n50)),
SearchField(name="has_variation", value=self.has_variation),
SearchField(name="has_regulation", value=self.has_regulation),
SearchField(name="has_homology", value=self.has_homology),
SearchField(name="annotation_method", value=self.genebuild_method_display),
SearchField(name="annotation_provider", value=self.genebuild_provider),
SearchField(name="genome_uuid", value=self.genome_uuid),
Expand Down Expand Up @@ -325,6 +327,10 @@ def has_regulation(self) -> bool:
"""Check if genome has regulatory features data"""
return self._has_dataset_type("regulatory_features")

def has_homology(self) -> bool:
"""Check if genome has homology data"""
return self._has_dataset_type("homologies")

def get_genebuild_provider(self) -> str:
"""
Get genebuild provider name.
Expand Down Expand Up @@ -833,6 +839,7 @@ def create_search_document(
"coding_genes": dataset_extractor.get_coding_genes(),
"has_variation": dataset_extractor.has_variation(),
"has_regulation": dataset_extractor.has_regulation(),
"has_homology": dataset_extractor.has_homology(),
"genebuild_provider": dataset_extractor.get_genebuild_provider(),
"genebuild_method_display": dataset_extractor.get_genebuild_method_display(),
}
Expand Down