odes

ODE Example

This example demonstrates how to use EnzymeML.jl to create and solve ordinary differential equations (ODEs) from an EnzymeML document.

Overview

The ode_example.jl script shows how to:

1. Load an EnzymeML document
2. Create an ODE system from the document's reactions
3. Extract initial conditions from measurements
4. Extract parameters from the document
5. Solve the ODE system for multiple initial conditions
6. Visualize the results
7. Update parameters in the document
8. Save the updated document

Running the Example

To run this example:

1. Make sure you have EnzymeML.jl installed
2. Navigate to the examples/odes directory
3. Run the script with Julia:

julia ode_example.jl