EnzymeML.jl/examples/odes/ode_example.json at master · EnzymeML/EnzymeML.jl · GitHub

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{
    "name": "enzymatic_reaction_with_rate_rules",
    "version": "1.0",
    "description": "Simple enzymatic reaction example with Michaelis-Menten kinetics and rate rules",
    "creators": [
        {
            "given_name": "Example",
            "family_name": "User",
            "mail": "example@example.com"
        }
    ],
    "parameters": [
        {
            "id": "vmax",
            "symbol": "vmax",
            "name": "vmax",
            "value": 7.0,
            "unit": {
                "id": "mmol / l / s",
                "name": "mmol / l / s"
            }
        },
        {
            "id": "km",
            "symbol": "km",
            "name": "km",
            "value": 100.0,
            "unit": {
                "id": "mmol / l",
                "name": "mmol / l"
            }
        }
    ],
    "measurements": [
        {
            "id": "m1",
            "name": "m1",
            "species_data": [
                {
                    "species_id": "substrate",
                    "initial": 120.0,
                    "data_unit": {
                        "id": "mmol / l",
                        "name": "mmol / l"
                    },
                    "time_unit": {
                        "id": "s",
                        "name": "s"
                    },
                    "data_type": "concentration",
                    "is_simulated": false
                },
                {
                    "species_id": "product",
                    "initial": 0.0,
                    "data_unit": {
                        "id": "mmol / l",
                        "name": "mmol / l"
                    },
                    "time_unit": {
                        "id": "s",
                        "name": "s"
                    },
                    "data_type": "concentration",
                    "is_simulated": false
                }
            ]
        },
        {
            "id": "m2",
            "name": "m2",
            "species_data": [
                {
                    "species_id": "substrate",
                    "initial": 500.0,
                    "data_unit": {
                        "id": "mmol / l",
                        "name": "mmol / l"
                    },
                    "time_unit": {
                        "id": "s",
                        "name": "s"
                    },
                    "data_type": "concentration",
                    "is_simulated": false
                },
                {
                    "species_id": "product",
                    "initial": 0.0,
                    "data_unit": {
                        "id": "mmol / l",
                        "name": "mmol / l"
                    },
                    "time_unit": {
                        "id": "s",
                        "name": "s"
                    },
                    "data_type": "concentration",
                    "is_simulated": false
                }
            ]
        }
    ],
    "equations": [
        {
            "species_id": "substrate",
            "equation": "-vmax * substrate / (km + substrate)",
            "equation_type": "ode"
        },
        {
            "species_id": "product",
            "equation": "vmax * substrate / (km + substrate)",
            "equation_type": "ode"
        }
    ]
}