docs(typedoc): use expand entry point strategy for folder-based organisation

Switch from single barrel entry point to directory expansion, giving
TypeDoc the source folder structure (operations/, speckit/, etc.)
instead of a flat re-export list. Excludes index barrel files, CLI
commands, and the schema generation script.

Author: Mearman

typedoc.html.json

@@ -1,6 +1,8 @@
 {
   "$schema": "https://typedoc.org/schema.json",
-  "entryPoints": ["./src/index.ts"],
+  "entryPoints": ["./src"],
+  "entryPointStrategy": "expand",
+  "exclude": ["**/cli/**", "**/generate-schema.ts", "**/index.ts"],
   "out": "site",
   "plugin": ["typedoc-plugin-zod"],
   "name": "SysProM",

typedoc.json

@@ -1,6 +1,8 @@
 {
   "$schema": "https://typedoc.org/schema.json",
-  "entryPoints": ["./src/index.ts"],
+  "entryPoints": ["./src"],
+  "entryPointStrategy": "expand",
+  "exclude": ["**/cli/**", "**/generate-schema.ts", "**/index.ts"],
   "out": "docs/api",
   "plugin": ["typedoc-plugin-markdown", "typedoc-plugin-zod"],
   "name": "SysProM",