Honor allow policy for opt-in tools

[chubes4]

Summary

• Carry explicit allow-mode agent tool policy into the early opt-in allow list before Data Machine gathers tool sources.
• Allow request-level allow-mode tool_policy to expose requires_opt_in tools consistently with allow_only.
• Add smoke coverage for opt-in tools allowed by tool policy.

Tests

• php tests/tool-source-registry-smoke.php
• php tests/agent-conversation-runner-request-smoke.php
• vendor/bin/phpcs inc/Engine/AI/Tools/ToolPolicyResolver.php inc/Engine/AI/conversation-loop.php tests/tool-source-registry-smoke.php tests/agent-conversation-runner-request-smoke.php

Supports the WP Codebox sandbox workspace-write path after Extra-Chill/data-machine-code#459 and Automattic/wp-codebox#182.

AI assistance

• AI assistance: Yes
• Tool(s): OpenCode (GPT-5.5)
• Used for: Traced the WP Codebox sandbox tool policy issue, drafted the resolver fix and smoke coverage, and verified locally plus on Homeboy Lab.

[homeboy-ci]

Homeboy Results — data-machine

Lint

✅ lint — passed

ℹ️ Full options: homeboy docs commands/lint
Deep dive: homeboy lint data-machine --changed-since 7bb63b0

Artifacts and drill-down

• CI results artifact: homeboy-ci-results-data-machine-lint-quality-Linux-node24 contains immediate command JSON for this action invocation.
• Observation artifact: homeboy-observations-data-machine-lint-quality-Linux-node24 contains exported Homeboy run history for deeper queries.
• Drill-down: download the observation artifact, then run homeboy runs import <dir>, homeboy runs list, and homeboy runs findings <run-id>.
• Artifacts are attached to the workflow run: https://github.com/Extra-Chill/data-machine/actions/runs/26544775552

Test

✅ test — passed

• 72 passed

ℹ️ Auto-fix lint issues: homeboy refactor data-machine --from lint --write
ℹ️ Collect coverage: homeboy test data-machine --coverage
ℹ️ Save test baseline: homeboy test data-machine --baseline
ℹ️ Pass args to test runner: homeboy test -- [args]
ℹ️ Full options: homeboy docs commands/test
Deep dive: homeboy test data-machine --changed-since 7bb63b0

Artifacts and drill-down

• CI results artifact: homeboy-ci-results-data-machine-test-quality-Linux-node24 contains immediate command JSON for this action invocation.
• Observation artifact: homeboy-observations-data-machine-test-quality-Linux-node24 contains exported Homeboy run history for deeper queries.
• Drill-down: download the observation artifact, then run homeboy runs import <dir>, homeboy runs list, and homeboy runs findings <run-id>.
• Artifacts are attached to the workflow run: https://github.com/Extra-Chill/data-machine/actions/runs/26544775552

Audit

✅ audit — passed

• dead_code — 194 finding(s)
• requested_detectors — 132 finding(s)
• intra-method-duplication — 70 finding(s)
• repeated_literal_shape — 13 finding(s)
• field_patterns — 9 finding(s)
• parallel-implementation — 8 finding(s)
• structural — 8 finding(s)
• dead_guard — 6 finding(s)
• Taxonomy — 5 finding(s)
• Abilities — 4 finding(s)
• Total: 464 finding(s)

Deep dive: homeboy audit data-machine --changed-since 7bb63b0

Artifacts and drill-down

• CI results artifact: homeboy-ci-results-data-machine-audit-quality-Linux-node24 contains immediate command JSON for this action invocation.
• Observation artifact: homeboy-observations-data-machine-audit-quality-Linux-node24 contains exported Homeboy run history for deeper queries.
• Drill-down: download the observation artifact, then run homeboy runs import <dir>, homeboy runs list, and homeboy runs findings <run-id>.
• Artifacts are attached to the workflow run: https://github.com/Extra-Chill/data-machine/actions/runs/26544775552

Tooling versions

• Homeboy CLI: homeboy 0.199.4+bc169bb1
• Extension: wordpress from https://github.com/Extra-Chill/homeboy-extensions
• Extension revision: fbe2bfe7
• Action: unknown@unknown