Merge pull request #355 from F2I-Consulting/dev

v2.12.1.0

Author: philippeVerney

.github/workflows/github-actions.yml

@@ -21,7 +21,7 @@ jobs:
           cmake --build . --config Release --target INSTALL
       - name: Boost install
         run: |
-          (New-Object System.Net.WebClient).DownloadFile("https://boostorg.jfrog.io/artifactory/main/release/1.86.0/binaries/boost_1_86_0-msvc-14.2-64.exe", "${{ runner.temp }}\boost.exe")
+          (New-Object System.Net.WebClient).DownloadFile("https://archives.boost.io/release/1.87.0/binaries/boost_1_87_0-msvc-14.2-64.exe", "${{ runner.temp }}\boost.exe")
           Start-Process -Wait -FilePath "${{ runner.temp }}\boost.exe" "/SILENT","/SP-","/SUPPRESSMSGBOXES","/DIR=${{ runner.temp }}\boost-install"
       - name: CMake build and install
         run: |
@@ -80,7 +80,7 @@ jobs:
           cmake --build . --config Release --target INSTALL
       - name: Boost install
         run: |
-          (New-Object System.Net.WebClient).DownloadFile("https://boostorg.jfrog.io/artifactory/main/release/1.86.0/binaries/boost_1_86_0-msvc-14.2-64.exe", "${{ runner.temp }}\boost.exe")
+          (New-Object System.Net.WebClient).DownloadFile("https://archives.boost.io/release/1.87.0/binaries/boost_1_87_0-msvc-14.2-64.exe", "${{ runner.temp }}\boost.exe")
           Start-Process -Wait -FilePath "${{ runner.temp }}\boost.exe" "/SILENT","/SP-","/SUPPRESSMSGBOXES","/DIR=${{ runner.temp }}\boost-install"
       - name: Swig install
         run: |
@@ -180,7 +180,6 @@ jobs:
         env:
           CIBW_BUILD: cp38-win_amd64 cp39-win_amd64 cp310-win_amd64 cp311-win_amd64 cp312-win_amd64 cp313-win_amd64
           CIBW_ARCHS: auto64
-          CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28
           CIBW_BEFORE_ALL: >
             %VCPKG_INSTALLATION_ROOT%\vcpkg install boost-uuid minizip hdf5[zlib] &&
             cd ${{ runner.temp }} &&
@@ -252,13 +251,15 @@ jobs:
           CIBW_BUILD: cp38-macosx_* cp39-macosx_* cp310-macosx_* cp311-macosx_* cp312-macosx_* cp313-macosx_*
           CIBW_ARCHS: auto64
           # See https://cibuildwheel.pypa.io/en/stable/cpp_standards/#macos-and-deployment-target-versions
-          MACOSX_DEPLOYMENT_TARGET: 10.14
+          MACOSX_DEPLOYMENT_TARGET: 11.0
+          # Dont use brew for dependencies https://github.com/pypa/cibuildwheel/issues/1251#issuecomment-1234553537
           CIBW_BEFORE_ALL: >
-            brew install boost swig &&
-            git clone https://github.com/F2I-Consulting/Minizip.git ${{ github.workspace }}/../minizip &&
             cd ${{ github.workspace }}/.. &&
-            mkdir minizip-build &&
-            cd minizip-build &&
+            wget https://archives.boost.io/release/1.87.0/source/boost_1_87_0.tar.gz &&
+            tar xf boost_1_87_0.tar.gz &&
+            git clone https://github.com/F2I-Consulting/Minizip.git ${{ github.workspace }}/../minizip &&
+            mkdir ${{ github.workspace }}/../minizip-build &&
+            cd ${{ github.workspace }}/../minizip-build &&
             cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DCMAKE_INSTALL_PREFIX=${{ github.workspace }}/../minizip-install ${{ github.workspace }}/../minizip &&
             cmake --build . -j2 --config Release &&
             cmake --install . &&
@@ -267,12 +268,13 @@ jobs:
             tar xf hdf5-1.14.5.tar.gz &&
             mkdir hdf5-build &&
             cd hdf5-build &&
-            cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_TESTING:BOOL=OFF -DHDF5_BUILD_TOOLS:BOOL=OFF -DHDF5_BUILD_EXAMPLES:BOOL=OFF -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_HL_LIB:BOOL=OFF -DCMAKE_INSTALL_PREFIX:STRING=${{ github.workspace }}/../hdf5-install ../hdf5-1.14.5 &&
+            cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_TESTING:BOOL=OFF -DHDF5_BUILD_TOOLS:BOOL=OFF -DHDF5_BUILD_EXAMPLES:BOOL=OFF -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_HL_LIB:BOOL=OFF -DCMAKE_INSTALL_PREFIX:STRING=${{ github.workspace }}/../hdf5-install ${{ github.workspace }}/../hdf5-1.14.5 &&
             cmake --build . -j2 --config Release &&
             cmake --install . &&
+            brew install swig &&
             mkdir ${{ github.workspace }}/../build &&
             cd ${{ github.workspace }}/../build &&
-            cmake -DCMAKE_BUILD_TYPE=Release -DMINIZIP_ROOT=${{ github.workspace }}/../minizip-install -DHDF5_ROOT=${{ github.workspace }}/../hdf5-install -DHDF5_USE_STATIC_LIBRARIES=TRUE -DWITH_PYTHON_WRAPPING=TRUE -DCMAKE_INSTALL_PREFIX:STRING=${{ github.workspace }}/../fesapi-install ${{ github.workspace }} &&
+            cmake -DCMAKE_BUILD_TYPE=Release -DBOOST_ROOT=${{ github.workspace }}/../boost_1_87_0 -DMINIZIP_ROOT=${{ github.workspace }}/../minizip-install -DHDF5_ROOT=${{ github.workspace }}/../hdf5-install -DHDF5_USE_STATIC_LIBRARIES=TRUE -DWITH_PYTHON_WRAPPING=TRUE -DCMAKE_INSTALL_PREFIX:STRING=${{ github.workspace }}/../fesapi-install ${{ github.workspace }} &&
             cmake --build . -j2 --config Release &&
             cmake --install .
           # See https://cibuildwheel.pypa.io/en/stable/faq/#macos-passing-dyld_library_path-to-delocate

CMakeLists.txt

@@ -13,7 +13,7 @@ set (FESAPI_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR})
 # version mechanism
 set (Fesapi_VERSION_MAJOR 2)
 set (Fesapi_VERSION_MINOR 12)
-set (Fesapi_VERSION_PATCH 0)
+set (Fesapi_VERSION_PATCH 1)
 set (Fesapi_VERSION_TWEAK 0)
 
 set (Fesapi_VERSION ${Fesapi_VERSION_MAJOR}.${Fesapi_VERSION_MINOR}.${Fesapi_VERSION_PATCH}.${Fesapi_VERSION_TWEAK})

python/CMakeLists.txt

@@ -30,7 +30,7 @@ configure_file(${CMAKE_SOURCE_DIR}/cmake/swigPythonInclude.i.in ${CMAKE_SOURCE_D
 if (CMAKE_CXX_COMPILER_ID STREQUAL "MSVC")
 	set (EXTRA_COMPILE_ARGS "extra-compile-args=['/DSWIG_TYPE_TABLE=FESTAPI']")
 else ()
-	set (EXTRA_COMPILE_ARGS "extra-compile-args=['-DSWIG_TYPE_TABLE=FESTAPI', '-std=c++11']")
+	set (EXTRA_COMPILE_ARGS "extra-compile-args=['-DSWIG_TYPE_TABLE=FESTAPI', '-std=c++17']")
 endif()
 configure_file(${CMAKE_SOURCE_DIR}/cmake/pyproject.toml.in ${CMAKE_SOURCE_DIR}/python/pyproject.toml) # Overwrite if different
 

src/common/DataObjectRepository.cpp

@@ -649,7 +649,6 @@ COMMON_NS::AbstractObject* DataObjectRepository::addOrReplaceDataObject(std::uni
 				}
 
 				(*same).swap(proxy);
-				rawProxyPtr = proxy.get();
 			}
 			else {
 				if (!(*same)->isPartial()) {

swig/swigModule.i

@@ -32,6 +32,15 @@ under the License.
 
 %include "../src/nsDefinitions.h"
 
+#if defined(SWIGJAVA) || defined(SWIGCSHARP)
+	%nspace COMMON_NS::AbstractObject;
+	%nspace COMMON_NS::DataObjectReference;
+	%nspace COMMON_NS::DataObjectRepository;
+	%nspace COMMON_NS::EnumStringMapper;
+	%nspace COMMON_NS::EpcDocument;
+	%nspace COMMON_NS::HdfProxyFactory;
+#endif
+
 //************************/
 // JAVA
 //************************/
@@ -78,6 +87,14 @@ under the License.
 	SWIG_CSBODY_PROXY(public, public, SWIGTYPE)
 	SWIG_CSBODY_TYPEWRAPPER(public, public, public, SWIGTYPE)
 
+%typemap(cscode) COMMON_NS::DataObjectRepository %{
+  private HdfProxyFactory hdfProxyFactoryReference = null;
+%}
+
+%typemap(csin,
+         post="      hdfProxyFactoryReference = $csinput;"
+         ) COMMON_NS::HdfProxyFactory * factory "HdfProxyFactory.getCPtr($csinput)"
+	
 	%include "swigCsInclude.i"
 #endif
 
@@ -92,6 +109,22 @@ under the License.
 	%}
 	%include "swigPythonInclude.i"
 
+	/* Following extensions aims at preventing the Python garbage collector from
+	garbage collecting an HDF Proxy factory that may be still used by a repository. */
+	%fragment("hdf_proxy_factory_reference_init", "init") {
+		hdf_proxy_factory_reference();
+	}
+	%fragment("hdf_proxy_factory_reference_function", "header", fragment="hdf_proxy_factory_reference_init") {
+		static PyObject *hdf_proxy_factory_reference() {
+		  static PyObject *hdf_proxy_factory_reference_string = SWIG_Python_str_FromChar("__hdf_proxy_factory_reference");
+		  return hdf_proxy_factory_reference_string;
+		}
+	}
+	%extend COMMON_NS::DataObjectRepository {
+		%typemap(ret, fragment="hdf_proxy_factory_reference_function") void setHdfProxyFactory(COMMON_NS::HdfProxyFactory * factory) %{
+		  PyObject_SetAttr($self, hdf_proxy_factory_reference(), args);
+		%}
+	}
 #endif
 
 
@@ -172,15 +205,6 @@ under the License.
 
 typedef long long 				time_t;
 
-#if defined(SWIGJAVA) || defined(SWIGCSHARP)
-	%nspace COMMON_NS::AbstractObject;
-	%nspace COMMON_NS::DataObjectReference;
-	%nspace COMMON_NS::DataObjectRepository;
-	%nspace COMMON_NS::EnumStringMapper;
-	%nspace COMMON_NS::EpcDocument;
-	%nspace COMMON_NS::HdfProxyFactory;
-#endif
-
 namespace EML2_NS
 {
 	class Activity;
@@ -813,12 +837,18 @@ import com.f2i_consulting.fesapi.*;
 %}
 %typemap(javainterfaces) COMMON_NS::DataObjectRepository "AutoCloseable"
 %typemap(javacode) COMMON_NS::DataObjectRepository %{
+  private HdfProxyFactory hdfProxyFactoryReference;
+  
   @Override
   public void close() {
 	clear();
     delete();
   }
 %}
+%typemap(javain, 
+         post="      hdfProxyFactoryReference = $javainput;"
+         ) COMMON_NS::HdfProxyFactory * factory "HdfProxyFactory.getCPtr($javainput)"
+		 
 	/**
 	 * @brief	A DataObjectRepository stores in memory all dataObjects.
 	 *			This is the in-memory container which holds deserialized (EPC) files and fetched ETP dataobjects.