CI-mac-x86_64.yml

name: CI macOS 15 x86_64

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]
  release:
    types: [ published ]
  workflow_dispatch:

env:
  BUILD_TYPE: Release
  MACOSX_DEPLOYMENT_TARGET: 10.13

jobs:
  build:
    runs-on: macos-15-intel
    steps:
    - uses: actions/checkout@v2   
    
    - name: Install dependencies
      run: |
        brew install pcre # Needed by SWIG

    - name: Setup pyenv
      env:
        ACTIONS_ALLOW_UNSECURE_COMMANDS: true
        MACOSX_DEPLOYMENT_TARGET: 10.13
        PYTHON_CONFIGURE_OPTS: "--enable-framework"
        CFLAGS: "-Wno-implicit-function-declaration"
        LDFLAGS: "-L/usr/local/opt/zlib/lib"
        CPPFLAGS: "-I/usr/local/opt/zlib/include"
        PKG_CONFIG_PATH: "/usr/local/opt/zlib/lib/pkgconfig"
      uses: "gabrielfalcao/pyenv-action@v18"
      with:
          default: 3.6.9
        
    - name: Install pip dependencies
      run: |
        pip3 install --upgrade pip
        pip3 install twine wheel==0.37.1

    - name: Configure CMake
      run: |
        cmake -B ${{github.workspace}}/build \
            -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}}\
            -DCMAKE_OSX_ARCHITECTURES:STRING="x86_64" \
            -DFAST_MODULE_OpenVINO=ON \
            -DFAST_MODULE_DICOM=ON \
            -DFAST_MODULE_WholeSlideImaging=ON \
            -DFAST_MODULE_OpenIGTLink=ON \
            -DFAST_MODULE_Clarius=ON \
            -DFAST_MODULE_TensorFlow=ON \
            -DFAST_MODULE_HDF5=ON \
            -DFAST_MODULE_Plotting=ON \
            -DFAST_MODULE_Python=ON \
            -DFAST_Python_Version="3.6" \
            -DFAST_Python_Include="$(dirname $(pyenv which python))/../include/python3.6m/" \
            -DFAST_Python_Library="$(dirname $(pyenv which python))/../lib/libpython3.6.dylib" \
            -DFAST_MODULE_RealSense=OFF \
            -DFAST_BUILD_EXAMPLES=ON

    - name: Build
      run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -j 4

    - name: Build Python wheel
      env:
        MACOSX_DEPLOYMENT_TARGET: 10.13
      run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} --target python-wheel -j 4

    - name: Package
      run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} --target package -j 4

    - name: Upload archive package
      uses: actions/upload-artifact@v4
      with:
        name: Archive package (tar.xz)
        path: ${{github.workspace}}/build/fast_*.tar.xz
        if-no-files-found: error

    - name: Upload Python wheel
      uses: actions/upload-artifact@v4
      with:
        name: Python wheel
        path: ${{github.workspace}}/build/python/dist/pyfast-*.whl
        if-no-files-found: error

    - name: Upload archive package to release
      if: ${{ github.event_name == 'release' }}
      uses: svenstaro/upload-release-action@v2
      with:
        repo_token: ${{ secrets.GITHUB_TOKEN }}
        file: ${{github.workspace}}/build/fast_*.tar.xz
        file_glob: true
        tag: ${{ github.ref }}
        overwrite: true

    - name: Upload Python wheel to release
      if: ${{ github.event_name == 'release' }}
      uses: svenstaro/upload-release-action@v2
      with:
        repo_token: ${{ secrets.GITHUB_TOKEN }}
        file: ${{github.workspace}}/build/python/dist/pyfast-*.whl
        file_glob: true
        tag: ${{ github.ref }}
        overwrite: true

    - name: Upload Python wheel to PyPi
      if: ${{ github.event_name == 'release' && !contains(github.ref, 'rc') }}
      run: |
        twine upload --username __token__ --password ${{ secrets.PYPI_API_TOKEN }} ${{github.workspace}}/build/python/dist/pyfast-*.whl

  test-python-wheel:
    name: Test Python Wheel
    needs: [build]
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.6', '3.10', '3.x']
    runs-on: macos-15-intel
    steps:
      - name: Download wheel artifact
        uses: actions/download-artifact@v4
        with:
          name: 'Python wheel'
          path: ${{github.workspace}}/download/
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python version
        run: python -c "import sys; print(sys.version)"
      - name: Create virtual environment and install wheel
        run: |
          cd ${{github.workspace}}
          python -m venv venv # Get error if not using virtual environment for some reason
          source venv/bin/activate
          python -m pip install ${{github.workspace}}/download/pyfast-*.whl
      - name: Import FAST with Python
        run: |
          cd ${{github.workspace}}
          source venv/bin/activate
          python -c "import fast"

  test-python:
    name: Run Python Tests
    needs: [build]
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.10', '3.x']
    runs-on: macos-15-intel
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Download wheel artifact
        uses: actions/download-artifact@v4
        with:
          name: 'Python wheel'
          path: ${{github.workspace}}/download/
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python version
        run: python -c "import sys; print(sys.version)"
      - name: Create virtual environment and install wheel
        run: |
          cd ${{github.workspace}}
          python -m venv venv # Get error if not using virtual environment for some reason
          source venv/bin/activate
          python -m pip install ${{github.workspace}}/download/pyfast-*.whl numpy pytest
      - name: Cache test data
        id: cache-test-dataset
        uses: actions/cache@v4
        with:
          path: ~/FAST/data/
          key: test-dataset
          enableCrossOsArchive: true
      - name: Download test data
        run: |
          cd ${{github.workspace}}
          source venv/bin/activate
          python -c "import fast;fast.downloadTestDataIfNotExists()"
      - name: Run tests
        run: |
          cd ${{github.workspace}}
          source venv/bin/activate
          pytest source/FAST/ -v -k 'not test_shortcuts'