Flux Sampling in Microbial Metabolic Interactions
For pairwise interactions: Pipeline is similar to the tutorial shown in: https://github.com/opencobra/COBRA.tutorials/tree/9bc1b6b301aab711272e9732b950763942c621f3/analysis/microbeMicrobeInteractions Except, call simulatePairwiseInteractions_Sampling instead of simulatePairwiseInteractions
For Costless Exchange, script files are presented here. Download the models and media condition from https://www.nature.com/articles/s41467-018-07946-9 at https://github.com/segrelab/CostlessExchange
For AGREDA pooled model, download from https://www.nature.com/articles/s41467-021-25056-x at https://github.com/tblasco/AGREDA