notebooks

How to setup the companion notebook

Download the material from GitHub

1. Navigate to the GitHub repo
2. Locate the blue <> Code button on the top right of the page
3. Copy the material locally by either cloning the repository or hitting on Download ZIP

Setup a Python environment

This step implies you already have a Python environment manager (such as Miniconda) installed on your machine. If this is not the case, please find more instructions here.

1. Open a terminal
2. Create a new Python environment with the following command conda create -n p-val-env
3. Access the newly created environment by typing conda activate p-val-env
4. Install the required packages by typing each of the following commands one at a time:
   • conda install pip
   • pip install jupyterlab
   • pip install matplotlib
   • pip install pandas
   • pip install scikit_posthocs
5. Navigate to the folder where you saved the material in the previous step with cd /path/to/folder/
6. Launch Jupyter lab with the following command jupyter-lab

Open the notebook

1. In Jupyter lab, use the lefthand tab to navigate to the folder notebooks
2. Open the file named companion_notebook.ipynb
3. Run cells sequentially to reproduce the figures in the paper