Build(deps): Bump actions/setup-python from 6.0.0 to 6.1.0 (#4237)

* Build(deps): Bump actions/setup-python from 6.0.0 to 6.1.0

Bumps [actions/setup-python](https://github.com/actions/setup-python) from 6.0.0 to 6.1.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v6.0.0...v6.1.0)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-version: 6.1.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

* Use the new pip-install parameter

* Fix type check

* Fix styling

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Dongdong Tian <seisman.info@gmail.com>

Author: dependabot[bot]

.github/workflows/format-command.yml

@@ -32,15 +32,14 @@ jobs:
           persist-credentials: true
 
       # Setup Python environment
-      - uses: actions/setup-python@v6.0.0
+      - name: Set up Python and install dependencies
+        uses: actions/setup-python@v6.1.0
         with:
           python-version: '3.13'
+          pip-install: ruff prek
 
-      # Install formatting tools
-      - name: Install formatting tools
-        run: |
-          python -m pip install ruff prek
-          python -m pip list
+      - name: List installed packages
+        run: python -m pip list
 
       # Run "make format" and commit the change to the PR branch
       - name: Commit to the PR branch if any changes

.github/workflows/publish-to-pypi.yml

@@ -49,13 +49,11 @@ jobs:
         fetch-depth: 0
         persist-credentials: false
 
-    - name: Set up Python
-      uses: actions/setup-python@v6.0.0
+    - name: Set up Python and install dependencies
+      uses: actions/setup-python@v6.1.0
       with:
         python-version: '3.13'
-
-    - name: Install dependencies
-      run: python -m pip install build
+        pip-install: build
 
     # This step is only necessary for testing purposes and for TestPyPI
     - name: Fix up version string for TestPyPI

.github/workflows/style_checks.yaml

@@ -30,16 +30,14 @@ jobs:
         with:
           persist-credentials: false
 
-      # Setup Python
-      - name: Set up Python
-        uses: actions/setup-python@v6.0.0
+      - name: Set up Python and install dependencies
+        uses: actions/setup-python@v6.1.0
         with:
           python-version: '3.13'
+          pip-install: ruff prek
 
-      - name: Install packages
-        run: |
-          python -m pip install ruff prek
-          python -m pip list
+      - name: List installed packages
+        run: python -m pip list
 
       - name: Formatting check (ruff + prek)
         run: |

.github/workflows/type_checks.yml

@@ -41,23 +41,22 @@ jobs:
 
       # Setup Python
       - name: Set up Python
-        uses: actions/setup-python@v6.0.0
+        uses: actions/setup-python@v6.1.0
         with:
           python-version: '3.13'
-
-      - name: Install packages
-        run: |
           # Need to install four groups of packages:
           # 1. required packages
           # 2. optional packages
           # 3. type checker and stub packages
           # 4. other packages that are used somewhere in PyGMT
-          python -m pip install \
-            numpy pandas xarray packaging \
-            contextily geopandas ipython pyarrow rioxarray \
-            mypy pandas-stubs pyarrow-stubs \
+          pip-install: |
+            numpy pandas xarray packaging
+            contextily geopandas ipython pyarrow rioxarray
+            mypy pandas-stubs pyarrow-stubs
             matplotlib pytest
-          python -m pip list
+
+      - name: List install packages
+        run: python -m pip list
 
       - name: Static type check
         run: make typecheck